Literature DB >> 35610580

Correction: Genetic diversity and signatures of selection for heat tolerance and immune response in Iranian native chickens.

Hojjat Asadollahpour Nanaei1, Hamed Kharrati-Koopaee2, Ali Esmailizadeh3.   

Abstract

Entities:  

Year:  2022        PMID: 35610580      PMCID: PMC9131672          DOI: 10.1186/s12864-022-08579-5

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   4.547


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Correction: BMC Genomics 23, 224 (2022) https://doi.org/10.1186/s12864-022-08434-7 Following publication of the original article [1], it was reported that the authors had not cited Wang et al. [2]. Therefore, the ‘Methods’ section, ‘Availability of data and materials’ declaration and the ‘References’ are incomplete and should be revised as described below. In the ‘Re-sequencing of selected samples, quality checking and SNP calling’ sub-section the sentence highlighted in bold has been added: “The individual genomes from nine indigenous chicken ecotypes (n=51) and two commercial lines (n=21) were sequenced on an Illumina Hiseq 2000 platform with a read length of 125 bp and~10.2×coverage (Additional file 1: Table S1). Whole-genome sequencing of the samples using the next-generation sequencing technique was conducted within the framework of the Global Chicken Genome Project () led by Kunming Institute of Zoology, Chinese Academy of Sciences (KIZ-CAS) and described by Wang et al. [2, 3].” The ‘Availability of data and materials’ declaration has been revised. The original declaration stated: “The whole genome sequencing data for all chicken individuals generated in this study have been deposited at NCBI SRA Database with accession code: PRJNA807738 or accessible through https://www.ncbi.nlm.nih.gov/bioproject/ PRJNA807738. The NCBI accession numbers used in this study can be found in Additional file 1: Table S1. Furthermore, the whole genome sequencing data, BAM files, and genotypes (VCF) have been submitted in the ChickenSD database (http://bigd.big.ac.cn/chickensd/).” The revised declaration should read: “The datasets used for the current study were from Wang et al [2]. The raw sequencing data, alignment BAM files, and genotypes (VCF) are available in the ChickenSD database (http://bigd.big.ac.cn/chickensd/)“. Finally, Additional file 1: Table S1 has been updated and is provided in this Correction article. The original article [1] has been updated. Additional file 1. Table S1: Sample information for each chicken (72 individuals) used in this study.
  3 in total

1.  863 genomes reveal the origin and domestication of chicken.

Authors:  Ming-Shan Wang; Mukesh Thakur; Min-Sheng Peng; Yu Jiang; Laurent Alain François Frantz; Ming Li; Jin-Jin Zhang; Sheng Wang; Joris Peters; Newton Otieno Otecko; Chatmongkon Suwannapoom; Xing Guo; Zhu-Qing Zheng; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Hidayat Ashari; Sri Suladari; Moch Syamsul Arifin Zein; Szilvia Kusza; Saeed Sohrabi; Hamed Kharrati-Koopaee; Quan-Kuan Shen; Lin Zeng; Min-Min Yang; Ya-Jiang Wu; Xing-Yan Yang; Xue-Mei Lu; Xin-Zheng Jia; Qing-Hua Nie; Susan Joy Lamont; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasige; Shao-Hong Feng; Jing-Fang Si; Hao Zhang; Jie-Qiong Jin; Ming-Li Li; Yan-Hu Liu; Hong-Man Chen; Cheng Ma; Shan-Shan Dai; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Thi-Thuy Le; Okeyo Ally Mwai; Mohamed Nawaz Mohamed Ibrahim; Megan Supple; Beth Shapiro; Olivier Hanotte; Guojie Zhang; Greger Larson; Jian-Lin Han; Dong-Dong Wu; Ya-Ping Zhang
Journal:  Cell Res       Date:  2020-06-25       Impact factor: 25.617

2.  Genetic diversity and signatures of selection for heat tolerance and immune response in Iranian native chickens.

Authors:  Hojjat Asadollahpour Nanaei; Hamed Kharrati-Koopaee; Ali Esmailizadeh
Journal:  BMC Genomics       Date:  2022-03-22       Impact factor: 3.969

3.  Large-scale genomic analysis reveals the genetic cost of chicken domestication.

Authors:  Ming-Shan Wang; Jin-Jin Zhang; Xing Guo; Ming Li; Rachel Meyer; Hidayat Ashari; Zhu-Qing Zheng; Sheng Wang; Min-Sheng Peng; Yu Jiang; Mukesh Thakur; Chatmongkon Suwannapoom; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Moch Syamsul Arifin Zein; Szilvia Kusza; Hamed Kharrati-Koopaee; Lin Zeng; Yun-Mei Wang; Ting-Ting Yin; Min-Min Yang; Ming-Li Li; Xue-Mei Lu; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasig; Shao-Hong Feng; Hao Zhang; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Le Thi Thuy; Okeyo A Mwai; Mohamed Nawaz Mohamed Ibrahim; Guojie Zhang; Kai-Xing Qu; Olivier Hanotte; Beth Shapiro; Mirte Bosse; Dong-Dong Wu; Jian-Lin Han; Ya-Ping Zhang
Journal:  BMC Biol       Date:  2021-06-16       Impact factor: 7.431

  3 in total

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