Literature DB >> 35610052

DrugVirus.info 2.0: an integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs).

Aleksandr Ianevski1, Ronja M Simonsen1, Vegard Myhre1, Tanel Tenson2, Valentyn Oksenych3, Magnar Bjørås1,4, Denis E Kainov1,2,5.   

Abstract

Viruses can cross species barriers and cause unpredictable outbreaks in man with substantial economic and public health burdens. Broad-spectrum antivirals, (BSAs, compounds inhibiting several human viruses), and BSA-containing drug combinations (BCCs) are deemed as immediate therapeutic options that fill the void between virus identification and vaccine development. Here, we present DrugVirus.info 2.0 (https://drugvirus.info), an integrative interactive portal for exploration and analysis of BSAs and BCCs, that greatly expands the database and functionality of DrugVirus.info 1.0 webserver. Through the data portal that now expands the spectrum of BSAs and provides information on BCCs, we developed two modules for (i) interactive analysis of users' own antiviral drug and combination screening data and their comparison with published datasets, and (ii) exploration of the structure-activity relationship between various BSAs. The updated portal provides an essential toolbox for antiviral drug development and repurposing applications aiming to identify existing and novel treatments of emerging and re-emerging viral threats.
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2022        PMID: 35610052      PMCID: PMC9252782          DOI: 10.1093/nar/gkac348

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  16 in total

1.  Extended-connectivity fingerprints.

Authors:  David Rogers; Mathew Hahn
Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

2.  Dose-Response Analysis Using R.

Authors:  Christian Ritz; Florent Baty; Jens C Streibig; Daniel Gerhard
Journal:  PLoS One       Date:  2015-12-30       Impact factor: 3.240

Review 3.  Mono- and combinational drug therapies for global viral pandemic preparedness.

Authors:  Aleksandr Ianevski; Rouan Yao; Ronja M Simonsen; Vegard Myhre; Erlend Ravlo; Gerda D Kaynova; Eva Zusinaite; Judith M White; Stephen J Polyak; Valentyn Oksenych; Marc P Windisch; Qiuwei Pan; Eglė Lastauskienė; Astra Vitkauskienė; Algimantas Matukevičius; Tanel Tenson; Magnar Bjørås; Denis E Kainov
Journal:  iScience       Date:  2022-03-17

4.  SynergyFinder 2.0: visual analytics of multi-drug combination synergies.

Authors:  Aleksandr Ianevski; Anil K Giri; Tero Aittokallio
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

Review 5.  Broad-spectrum antiviral agents.

Authors:  Jun-Da Zhu; Wen Meng; Xiao-Jia Wang; Hwa-Chain R Wang
Journal:  Front Microbiol       Date:  2015-05-22       Impact factor: 5.640

6.  SynergyFinder: a web application for analyzing drug combination dose-response matrix data.

Authors:  Aleksandr Ianevski; Liye He; Tero Aittokallio; Jing Tang
Journal:  Bioinformatics       Date:  2017-08-01       Impact factor: 6.937

7.  Breeze: an integrated quality control and data analysis application for high-throughput drug screening.

Authors:  Swapnil Potdar; Aleksandr Ianevski; John-Patrick Mpindi; Dmitrii Bychkov; Clément Fiere; Philipp Ianevski; Bhagwan Yadav; Krister Wennerberg; Tero Aittokallio; Olli Kallioniemi; Jani Saarela; Päivi Östling
Journal:  Bioinformatics       Date:  2020-06-01       Impact factor: 6.937

8.  DrugCentral 2018: an update.

Authors:  Oleg Ursu; Jayme Holmes; Cristian G Bologa; Jeremy J Yang; Stephen L Mathias; Vasileios Stathias; Dac-Trung Nguyen; Stephan Schürer; Tudor Oprea
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

Review 9.  Novel activities of safe-in-human broad-spectrum antiviral agents.

Authors:  Aleksandr Ianevski; Eva Zusinaite; Suvi Kuivanen; Mårten Strand; Hilde Lysvand; Mona Teppor; Laura Kakkola; Henrik Paavilainen; Mira Laajala; Hannimari Kallio-Kokko; Miia Valkonen; Anu Kantele; Kaidi Telling; Irja Lutsar; Pille Letjuka; Natalja Metelitsa; Valentyn Oksenych; Magnar Bjørås; Svein Arne Nordbø; Uga Dumpis; Astra Vitkauskiene; Christina Öhrmalm; Kåre Bondeson; Anders Bergqvist; Tero Aittokallio; Rebecca J Cox; Magnus Evander; Veijo Hukkanen; Varpu Marjomaki; Ilkka Julkunen; Olli Vapalahti; Tanel Tenson; Andres Merits; Denis Kainov
Journal:  Antiviral Res       Date:  2018-04-23       Impact factor: 5.970

Review 10.  Discovery and development of safe-in-man broad-spectrum antiviral agents.

Authors:  Petter I Andersen; Aleksandr Ianevski; Hilde Lysvand; Astra Vitkauskiene; Valentyn Oksenych; Magnar Bjørås; Kaidi Telling; Irja Lutsar; Uga Dumpis; Yasuhiko Irie; Tanel Tenson; Anu Kantele; Denis E Kainov
Journal:  Int J Infect Dis       Date:  2020-02-17       Impact factor: 3.623

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  1 in total

1.  Novel Synergistic Anti-Enteroviral Drug Combinations.

Authors:  Aleksandr Ianevski; Eva Zusinaite; Tanel Tenson; Valentyn Oksenych; Wei Wang; Jan Egil Afset; Magnar Bjørås; Denis E Kainov
Journal:  Viruses       Date:  2022-08-25       Impact factor: 5.818

  1 in total

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