Literature DB >> 35608336

Differential ion dehydration energetics explains selectivity in the non-canonical lysosomal K+ channel TMEM175.

SeCheol Oh1, Fabrizio Marinelli2, Wenchang Zhou2, Jooyeon Lee3, Ho Jeong Choi3, Min Kim3, José D Faraldo-Gómez2, Richard K Hite1.   

Abstract

Structures of the human lysosomal K+ channel transmembrane protein 175 (TMEM175) in open and closed states revealed a novel architecture lacking the canonical K+ selectivity filter motif present in previously known K+ channel structures. A hydrophobic constriction composed of four isoleucine residues was resolved in the pore and proposed to serve as the gate in the closed state, and to confer ion selectivity in the open state. Here, we achieve higher-resolution structures of the open and closed states and employ molecular dynamics simulations to analyze the conducting properties of the putative open state, demonstrating that it is permeable to K+ and, to a lesser degree, also Na+. Both cations must dehydrate significantly to penetrate the narrow hydrophobic constriction, but ion flow is assisted by a favorable electrostatic field generated by the protein that spans the length of the pore. The balance of these opposing energetic factors explains why permeation is feasible, and why TMEM175 is selective for K+ over Na+, despite the absence of the canonical selectivity filter. Accordingly, mutagenesis experiments reveal an exquisite sensitivity of the channel to perturbations that mitigate the constriction. Together, these data reveal a novel mechanism for selective permeation of ions by TMEM175 that is unlike that of other K+ channels.

Entities:  

Keywords:  human; ion channel; membrane transport; molecular biophysics; potassium channel; structural biology

Mesh:

Substances:

Year:  2022        PMID: 35608336      PMCID: PMC9129878          DOI: 10.7554/eLife.75122

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.713


  47 in total

1.  TMEM175 Is an Organelle K(+) Channel Regulating Lysosomal Function.

Authors:  Chunlei Cang; Kimberly Aranda; Young-jun Seo; Bruno Gasnier; Dejian Ren
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  Crystal structure of a mammalian voltage-dependent Shaker family K+ channel.

Authors:  Stephen B Long; Ernest B Campbell; Roderick Mackinnon
Journal:  Science       Date:  2005-07-07       Impact factor: 47.728

3.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

Authors:  D A Doyle; J Morais Cabral; R A Pfuetzner; A Kuo; J M Gulbis; S L Cohen; B T Chait; R MacKinnon
Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

4.  Theory and simulation of ion conduction in the pentameric GLIC channel.

Authors:  Fangqiang Zhu; Gerhard Hummer
Journal:  J Chem Theory Comput       Date:  2012-03-07       Impact factor: 6.006

5.  A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations.

Authors:  Fabrizio Marinelli; Fabio Pietrucci; Alessandro Laio; Stefano Piana
Journal:  PLoS Comput Biol       Date:  2009-08-07       Impact factor: 4.475

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

8.  A voltage-dependent K+ channel in the lysosome is required for refilling lysosomal Ca2+ stores.

Authors:  Wuyang Wang; Xiaoli Zhang; Qiong Gao; Maria Lawas; Lu Yu; Xiping Cheng; Mingxue Gu; Nirakar Sahoo; Xinran Li; Ping Li; Stephen Ireland; Andrea Meredith; Haoxing Xu
Journal:  J Cell Biol       Date:  2017-05-03       Impact factor: 10.539

9.  Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields.

Authors:  Riccardo Ocello; Simone Furini; Francesca Lugli; Maurizio Recanatini; Carmen Domene; Matteo Masetti
Journal:  J Chem Inf Model       Date:  2020-12-09       Impact factor: 4.956

10.  Structural basis for ion selectivity in TMEM175 K+ channels.

Authors:  Roman P Jakob; Tobias Schulze; Janine D Brunner; Yvonne Neldner; Anna Moroni; Gerhard Thiel; Timm Maier; Stephan Schenck
Journal:  Elife       Date:  2020-04-08       Impact factor: 8.140

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