Literature DB >> 356045

ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12.

T A Bickle, C Brack, R Yuan.   

Abstract

ATP induces a conformational change in the Escherichia coli K-12 restriction enzyme that allows it to discriminate between unmodified and modified DNA recognition sequences. This conformational change does not require ATP hydrolysis. However, ATP hydrolysis is a requirement for DNA cleavage.

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Year:  1978        PMID: 356045      PMCID: PMC392721          DOI: 10.1073/pnas.75.7.3099

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  Mapping of recognition sites for the restriction endonuclease from Escherichia coli K12 on bacteriophage PM2 DNA.

Authors:  C Brack; H Eberle; T A Bickle; R Yuan
Journal:  J Mol Biol       Date:  1976-12-15       Impact factor: 5.469

2.  Cleavage of bacteriophage fl DNA by the restriction enzyme of Escherichia coli B.

Authors:  K Horiuchi; N D Zinder
Journal:  Proc Natl Acad Sci U S A       Date:  1972-11       Impact factor: 11.205

3.  ATP hydrolysis by restriction endonuclease from E. coli K.

Authors:  R Yuan; J Heywood; M Meselson
Journal:  Nat New Biol       Date:  1972-11-08

4.  Host specificity of DNA produced by Escherichia coli. XV. The role of nucleotide methylation in in vitro B-specific modification.

Authors:  U Kühnlein; W Arber
Journal:  J Mol Biol       Date:  1972-01-14       Impact factor: 5.469

5.  Kinetics of methylation of DNA by a restriction endonuclease from Escherichia coli B.

Authors:  G F Vovis; K Horiuchi; N D Zinder
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

6.  Adenylyl imidodiphosphate, an adenosine triphosphate analog containing a P--N--P linkage.

Authors:  R G Yount; D Babcock; W Ballantyne; D Ojala
Journal:  Biochemistry       Date:  1971-06-22       Impact factor: 3.162

7.  DNA restriction enzyme from E. coli.

Authors:  M Meselson; R Yuan
Journal:  Nature       Date:  1968-03-23       Impact factor: 49.962

8.  The chromosome of bacteriophage T5. I. Analysis of the single-stranded DNA fragments by agarose gel electrophoresis.

Authors:  G S Hayward; M G Smith
Journal:  J Mol Biol       Date:  1972-02-14       Impact factor: 5.469

9.  A specific complex between a restriction endonuclease and its DNA substrate.

Authors:  R Yuan; M Meselson
Journal:  Proc Natl Acad Sci U S A       Date:  1970-02       Impact factor: 11.205

10.  DNA modification methylase activity of Escherichia coli restriction endonucleases K and P.

Authors:  A Haberman; J Heywood; M Meselson
Journal:  Proc Natl Acad Sci U S A       Date:  1972-11       Impact factor: 11.205

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  24 in total

1.  Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy.

Authors:  T Berge; D J Ellis; D T Dryden; J M Edwardson; R M Henderson
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

Review 2.  Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle).

Authors:  N E Murray
Journal:  Microbiol Mol Biol Rev       Date:  2000-06       Impact factor: 11.056

3.  Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI.

Authors:  L R García; I J Molineux
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

4.  Localization of a protein-DNA interface by random mutagenesis.

Authors:  M O'Neill; D T Dryden; N E Murray
Journal:  EMBO J       Date:  1998-12-01       Impact factor: 11.598

Review 5.  The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes.

Authors:  Yogitha N Srikhanta; Kate L Fox; Michael P Jennings
Journal:  Nat Rev Microbiol       Date:  2010-02-08       Impact factor: 60.633

6.  Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates.

Authors:  M D Szczelkun; M S Dillingham; P Janscak; K Firman; S E Halford
Journal:  EMBO J       Date:  1996-11-15       Impact factor: 11.598

Review 7.  Prokaryotic DNA methylation and its functional roles.

Authors:  Hoon Je Seong; Sang-Wook Han; Woo Jun Sul
Journal:  J Microbiol       Date:  2021-02-23       Impact factor: 3.422

8.  The nucleotide sequence recognised by the Escherichia coli D type I restriction and modification enzyme.

Authors:  V Nagaraja; M Stieger; C Nager; S M Hadi; T A Bickle
Journal:  Nucleic Acids Res       Date:  1985-01-25       Impact factor: 16.971

9.  Tracking EcoKI and DNA fifty years on: a golden story full of surprises.

Authors:  Wil A M Loenen
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

10.  HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling.

Authors:  Agnieszka Obarska-Kosinska; James E Taylor; Philip Callow; Jerzy Orlowski; Janusz M Bujnicki; G Geoff Kneale
Journal:  J Mol Biol       Date:  2007-11-17       Impact factor: 5.469

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