| Literature DB >> 35602506 |
Judy Savige1, Mary Huang1, Marina Shenelli Croos Dabrera1, Krushnam Shukla1, Joel Gibson1.
Abstract
Alport syndrome is inherited as an X-linked (XL), autosomal recessive (AR), or autosomal dominant (AD) disease, where pathogenic COL4A3 - COL4A5 variants affect the basement membrane collagen IV α3α4α5 network. About 50% of pathogenic variants in each gene (major rearrangements and large deletions in 15%, truncating variants in 20%, splicing changes in 15%) are associated with "severe" disease with earlier onset kidney failure, and hearing loss and ocular abnormalities in males with XL inheritance and in males and females with AR disease. Severe variants are also associated with early proteinuria which is itself a risk factor for kidney failure. The other half of pathogenic variants are missense changes which are mainly Gly substitutions. These are generally associated with later onset kidney failure, hearing loss, and less often with major ocular abnormalities. Further determinants of severity for missense variants for XL disease in males, and in AD disease, include Gly versus non-Gly substitutions; increased distance from a non-collagenous interruption or terminus; and Gly substitutions with a more (Arg, Glu, Asp, Val, and Trp) or less disruptive (Ala, Ser, and Cys) residue. Understanding genotype-phenotype correlations in Alport syndrome is important because they help predict the likely age at kidney failure, and the need for early and aggressive management with renin-angiotensin system blockade and other therapies. Genotype-phenotype correlations also help standardize patients with Alport syndrome undergoing trials of clinical treatment. It is unclear whether severe variants predispose more often to kidney cysts or coincidental IgA glomerulonephritis which are recognized increasingly in COL4A3-, COL4A4 - and COL4A5-associated disease.Entities:
Keywords: AD Alport syndrome; AR Alport syndrome; Alport syndrome; COL4A3; COL4A4; COL4A5; XL Alport syndrome; genotype-phenotype correlation
Year: 2022 PMID: 35602506 PMCID: PMC9120524 DOI: 10.3389/fmed.2022.865034
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Figure 1Collagen IV α3α4α5 heterotrimer demonstrating amino terminus, intermediate collagenous domain, and carboxy terminus. The intermediate collagenous domain comprises Gly-Xaa-Yaa repeats with multiple interruptions.
Types of all pathogenic variants in COL4A5, COL4A3, or COL4A4.
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| 20% | 23% | 14% | 49% | |
| 16% | 21% | 6% | 60% | |
| 21% | 35% | 8% | 44% | |
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| 99 (10%) | 321 (31%) | 137 (13%) | 514 (50%) | |
| 27(10%) | 106 (41%) | 44 (17%) | 82 (32%) | |
| 23 (9%) | 116 (47%) | 41 (16%) | 69 (28%) | |
Definitions of large rearrangements etc. differ for LOVD and ClinVar. .
Clinical phenotype of severe and hypomorphic variants.
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| X-linked Alport syndrome in males | Episodes of macroscopic haematuria with intercurrent infections; persistent haematuria, proteinuria; early onset kidney failure, hearing loss; central fleck retinopathy; lamellated GBM; more severe FSGS | Haematuria, intermittent haematuria or none; less and later onset proteinuria and FSGS; late onset kidney failure; late onset hearing loss; no lenticonus, less central retinopathy; thinned GBM or patchy lamellation |
| X-linked Alport syndrome in females | Haematuria, proteinuria; possibly late onset kidney failure; more widespread lamellation; FSGS | Haematuria, intermittent haematuria or none; late onset proteinuria if at all |
| Autosomal recessive Alport syndrome | Haematuria, proteinuria; early onset kidney failure, hearing loss; central fleck retinopathy | One or two hypomorphic variants delays age at kidney failure |
| Autosomal dominant Alport syndrome | Haematuria, possibly proteinuria; FSGS | Haematuria, intermittent haematuria or none |
GBM, glomerular basement membrane; FSGS, focal and segmental glomerulosclerosis.
Factors determining severity of genetic variants in the COL4A3–COL4A5 genes.
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| Location | Amino terminus | Severity probably depends more on type than location |
| Collagenous domain | ||
| Carboxy terminus | ||
| Type | Rearrangements, large deletions | Severe |
| Truncating variants | Severe | |
| Splice site variants | Severe if they result in truncation | |
| Missense variants | ||
| Gly substitution | Gly substitutions | More severe generally than non-Gly substitutions |
| Position 1 Gly substitutions | More severe than non-position 1 substitutions | |
| Position 1 Gly substitutions not adjacent to interruptions | More severe than variants adjacent to interruptions | |
| Gly substitutions with Arg, Asp, Glu, Trp, or Val | More severe than Gly substitutions with Ala, Ser, or Cys |
More severe variants are associated with a younger age at kidney failure or proteinuria.
Average age at kidney failure in males with pathogenic COL4A5 variants in LOVD in 2021 compared with 2016.
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| Missense | 504 (43%) | 20 (57%) | |
| Non-missense (severe) | 664 (57%) | 15 (43%) | |
| Ave age at kidney failure | 24.4 ± 7.8 years | 29.2 ± 14.6 years |
Relatively more missense (non-severe) variants were detected in 2021 which was consistent with the later age at onset of kidney failure. This may be because families with very severe disease had already been identified.