| Literature DB >> 35600858 |
Yingzhao Huang1, Qi Zhan1, Chenzhou Wu1, Nailin Liao1, Zhou Jiang1, Haoran Ding1, Kunyu Wang1, Yi Li1.
Abstract
Nanoparticles for the gene therapy field have seen remarkable progress over the last 10 years; however, low delivery efficiency and other reasons impede the clinical translation of nanocarriers. Therefore, a summary of hotspots and trends in this field is needed to promote further research development. In this research, from 2011 to 2021, 1,221 full records and cited references of Web of Science-indexed manuscripts regarding nanoparticle-targeted delivery systems have been analyzed by CiteSpace, VOSviewer, and MapEquation. In these software, keywords co-occurrence networks, alluvial diagram, co-citation networks, and structural variation analysis were carried out to emphasize the scientific community's focus on nanomedicine of targeted delivering of nucleic acids. Keywords such as transfection efficiency, tumor cell, membrane antigen, and siRNA delivery were highlighted in the density map from VOSviewer. In addition, an alluvial flow diagram was constructed to detect changes in concepts. In the co-citation network, cluster 1 (exosomes) and cluster 17 (genome editing) were new research fields, and the efforts in modifying nanoparticles were revealed in the structural variation analysis. Aptamer and SELEX (systematic evolution of ligands by exponential enrichment) represented a helpful system in targeted delivery. These results indicated that the transfection efficiency of nanocarriers required continuous improvements. With the approval of several nucleic acid drugs, a new content of nanoparticle carriers is to introduce gene-editing technology, especially CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9). In addition, exosomes have great potential as targeted nanoparticles. By mapping the knowledge domains of nanomedicine in targeted delivering of nucleic acids, this study analyzed the intellectual structure of this domain in the recent 10 years, highlighting classical modifications on nanoparticles and estimating future trends for researchers and decision-makers interested in this field.Entities:
Keywords: CiteSpace; bibliometrics; exosomes; genome editing; nanoparticles; targeted delivery
Year: 2022 PMID: 35600858 PMCID: PMC9114467 DOI: 10.3389/fphar.2022.868398
Source DB: PubMed Journal: Front Pharmacol ISSN: 1663-9812 Impact factor: 5.988
FIGURE 1The workflow of our study.
FIGURE 2Density map of the keyword co-occurrence network of nanoparticles in nucleic acid–targeted delivery. A higher density represents a closer distance between the nodes and a larger number of neighboring nodes. The color of the map varies from yellow (high density) to green (low density) (van Eck, 2021).
FIGURE 3Co-citation network of nanoparticles in nucleic acid–targeted delivery. In this map, the color varied from dark red to light yellow and represented the time slice from 2011 to 2021. References were drawn as nodes with the citation tree rings, and the thickness of the tree rings was directly proportional to the frequency of the articles. Clusters are shown as blocks colored by the average number of citing years, numbered by size (#0 = largest, #17 = smallest), and labeled by keywords of the citing articles (log-likelihood ratio).
Cluster information of the co-citation network of nanoparticles in nucleic acid–targeted delivery.
| Cluster ID | Size | Silhouette | Mean publishing year | Mean citing year | Label (log-likelihood ratio, p-level) |
|---|---|---|---|---|---|
| 0 | 37 | 0.94 | 2012 | 2018 | DNA nanotechnology (17.65, 1.0E-4) |
| 1 | 31 | 0.98 | 2015 | 2020 | Exosomes (13.27, 0.001) |
| 2 | 30 | 0.96 | 2008 | 2015 | Lipid nanoparticles (5.51, 0.05) |
| 3 | 28 | 1 | 2005 | 2015 | Polymer (7.63, 0.01) |
| 4 | 28 | 1 | 2005 | 2014 | Aptamers (27.01, 1.0E-4) |
| 5 | 26 | 0.83 | 2009 | 2017 | Micro RNAs (6, 0.05) |
| 6 | 26 | 0.94 | 2009 | 2016 | RNA interference (8.7, 0.005) |
| 7 | 23 | 0.94 | 2006 | 2014 | Co-delivery (13.89, 0.001) |
| 8 | 23 | 0.98 | 2007 | 2013 | Internalization (8.91, 0.005) |
| 9 | 20 | 0.93 | 2007 | 2015 | siRNA delivery (5.63, 0.05) |
| 10 | 19 | 0.88 | 2010 | 2016 | Aptamer (12.39, 0.001) |
| 11 | 18 | 0.84 | 2008 | 2017 | mRNA (6.45, 0.05) |
| 12 | 17 | 0.98 | 2009 | 2015 | Gold nanoparticles (7.62, 0.01) |
| 13 | 16 | 1 | 2008 | 2014 | Cell-penetrating peptides (15.26, 1.0E-4) |
| 14 | 16 | 0.92 | 2010 | 2015 | Aptamer (11.61, 0.001) |
| 15 | 13 | 0.96 | 2010 | 2017 | Combination therapy (8.55, 0.005) |
| 16 | 13 | 0.95 | 2009 | 2013 | RNA- bioconjugates (6.63, 0.05) |
| 17 | 9 | 1 | 2013 | 2021 | Genome editing (23.91, 1.0E-4) |
The value of silhouette shows the homogeneity of a particular cluster; a credible silhouette score tends to be close to 1 in general.
In Figure 3, cluster #14 was labeled poly(l-lysine) by using a mutual information algorithm, which is speculated to be a bug or special setting of CiteSpace.
Top 10 original studies with the highest modularity change rate (MCR) from 2011 to 2021.
| Cited frequency | MCR | Year | Title |
|---|---|---|---|
| 71 | 98.81 | 2013 | Site-Specific Antibody–Polymer Conjugates for siRNA Delivery |
| 21 | 97.33 | 2013 | Highlighting the Role of Polymer Length, Carbohydrate Size, and Nucleic Acid Type in Potency of Glycopolycation Agents for pDNA and siRNA Delivery |
| 62 | 96.94 | 2014 | Exosome-Encased Spherical Nucleic Acid Gold Nanoparticle Conjugates As Potent MicroRNA Regulation Agents |
| 0 | 96.65 | 2020 | Peptide Spiders: Peptide–Polymer Conjugates to Traffic Nucleic Acids |
| 24 | 94.44 | 2013 | Hydrophobic and Membrane-Permeable Polyethylenimine Nanoparticles Efficiently Deliver Nucleic Acids |
| 21 | 92.71 | 2015 | Targeted Decationized Polyplexes for siRNA Delivery |
| 46 | 89.81 | 2014 | Probing the Inherent Stability of siRNA Immobilized on Nanoparticle Constructs |
| 1 | 86.84 | 2021 | Evaluation of Dendronized Gold Nanoparticles as siRNAs Carriers into Cancer Cells |
| 20 | 85.18 | 2013 | Targeted Gene Delivery With Noncovalent Electrostatic Conjugates of sgc-8c Aptamer and Polyethylenimine |
| 6 | 84.56 | 2017 | Efficient |
FIGURE 4Alluvial flow diagram of nanoparticles in nucleic acid–targeted delivery. Networks are clustered and simplified by year, and streamlines connect the same nodes between years. Every row in this figure represents a keyword co-occurrence network corresponding to the sliced year; blocks refer to clusters of words and are named by the most crucial keyword in each cluster; and the lines connect the same keyword in separated years to observe changes in the concepts over time.
FIGURE 5Details of the cluster extracellular vesicle and its connections.