| Literature DB >> 35599863 |
Rashmi Yadav1, Sanjay Kalia2, Parimalan Rangan1, K Pradheep3, Govind Pratap Rao4, Vikender Kaur1, Renu Pandey4, Vandna Rai5, Celia Chalam Vasimalla1, Sapna Langyan1, Sanjula Sharma6, Boopathi Thangavel1, Virendra Singh Rana4, Harinder Vishwakarma1, Anshuman Shah5, Abhishek Saxena1, Ashok Kumar1, Kuldeep Singh7, Kadambot H M Siddique8.
Abstract
Climate change is shifting agricultural production, which could impact the economic and cultural contexts of the oilseed industry, including sesame. Environmental threats (biotic and abiotic stresses) affect sesame production and thus yield (especially oil content). However, few studies have investigated the genetic enhancement, quality improvement, or the underlying mechanisms of stress tolerance in sesame. This study reveals the challenges faced by farmers/researchers growing sesame crops and the potential genetic and genomic resources for addressing the threats, including: (1) developing sesame varieties that tolerate phyllody, root rot disease, and waterlogging; (2) investigating beneficial agro-morphological traits, such as determinate growth, prostrate habit, and delayed response to seed shattering; (3) using wild relatives of sesame for wide hybridization; and (4) advancing existing strategies to maintain sesame production under changing climatic conditions. Future research programs need to add technologies and develop the best research strategies for economic and sustainable development.Entities:
Keywords: Sesamum indicum; abiotic stresses; biotic stresses; core collection; genome assembly; germplasm; interspecific hybrids; phyllody
Year: 2022 PMID: 35599863 PMCID: PMC9120847 DOI: 10.3389/fpls.2022.863521
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 6.627
FIGURE 1Sesame germplasm exotic collections (ECs) in India from different countries.
Different sesame species endowed with specific key traits.
| Section | Taxon (synonyms) | Chromosome no. (2n) | Distribution and habitat | Key diagnostic characters | Traits of interest |
| 26 | Nigeria, Sudan, Mozambique; introduced weed in Andhra Pradesh, Karnataka, Tamil Nadu; found on sandy soils, in riverbeds, grasslands, and as a weed | Erect, annual, branched, lower leaves palmately divided, upper leaves linear to lanceolate, corolla pink to carmine, nectary sessile, capsule with tapering pointed beak and paper-thin walls, seeds membranous-winged, blackish | Resistant to phyllody, has been transferred to sesame; free from leaf webber and powdery mildew; good plant type, high number of seeds/capsules | ||
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| 26 | Tropics to subtropics | Erect, annual, simple or branched, leaves variable, basal leaves mostly trifoliolate, corolla campanulate, whitish/violet/pink, extrafloral nectaries 1–1.2 mm in diameter. Seeds black/brown/tan/beige/rust-red/mustard-yellow/ivory/white, (mostly) smooth or granular; seed edge sloping; non-dormant seed | ||
| 26 | India (except NE India); from plains, roadsides, railroad tracks, cultivated fields, and hilly forests at elevations to 1,600 m. Often weedy populations occur on roadsides | Erect, annual, branches, many leaves deeply dissected/divided with dentate margin, basal leaves mostly trifoliolate, flowers white to pale purple, with deep purple hue. Lower lip dark purple. Extrafloral nectaries 2–3 mm in diameter, yellow. Strictly bicarpellate capsule. Seeds black/dark brown, surface reticulate and rugose, seed edge acute. Often with markedly purple tinted leaves, stems, petioles and corolla. Dormant seeds | Donor for | ||
| 32 | India (Deccan Hills), Africa; prefers sandy tracts, coastal sandy areas, waste grounds | Prostrate, perennial; leaves small, blade irregularly undulate/dentate, leathery; flowers purplish red; capsules leathery, lignified, open with difficulty, seeds without wings, testa pitted | Resistant to phyllody, leaf webber, and powdery mildew; tolerates drought, salinity, and seed shattering | ||
| 64 | Africa, Madagascar, Upper Guinea, Sri Lanka; Indonesia, naturalized in Kerala and Tamil Nadu | Erect, annual, simple or branched, leaves entire (including basal leaves), sub-opposite, blade ovate to elliptical, extrafloral nectaries purplish, corolla pubescent, pink to purplish, capsule short, with a very short beak at apex, often with two short lateral protuberances, seeds blackish, smooth, margined, testa with radial sculptures | High number of capsules and wide adaptation; drought-tolerant, resistant to powdery mildew, leaf webber, and phyllody |
FIGURE 2Comprehension of sesame genomics for global food security. CGS, Chloroplast genome sequencing; WGS, Whole-genome sequencing; CWRs, Crop wild relatives; Ca2+, Calcium ion; CaM, Calmoldulin; ROS, Reactive oxygen species; CDPKs, Calcium-dependent protein kinases; CIPKs, CBL-interacting protein kinases PPs; MAP kinases, Mitogen activated protein kinases; PKs, Protein kinases; PPs, Protein phosphatases; ARF, Auxin response factors; MYB, Myeloblastoma; DREB, Dehydration responsive elemental binding; bZIP-Basic leucine zipper domain; NAC, NAM [No apical meristem, ATAF, CUC (Cup-shaped cotyledon)]; bHLH, Basic helix loop helix; Hsfs, Heat stress specific transcription factors; MADS-M, minichromosome maintenance factor 1 from Saccharomyces cerevisiae; A for Agamous (AG) from Arabidopsis thaliana (from now on, Arabidopsis); D for deficient from Antirrhinum majus; and S for serum response factor (SRF); APX, Ascorbate peroxidase; GPX, Glutathione peroxidase; SOD, Super oxide dismutase; LEA, Late embryogenesis abundant protein; MDHAR, Monodehydro ascorbate reductase; GOL, Galactinol synthase; CAT, Catalase; GRX, Glutathione reductase; GST, Glutathione-S-transferase; SAMe, S’adenosyl-l-methionine; PP2C, Protein phosphatase 2C; HSPs, Heat shock proteins; FAD, Fatty acid desaturase; PIF4, Phytochrome-interacting transcription factor 4.
Use of molecular markers for genetic diversity assessment in sesame.
| Plant material | Marker(s) used | PIC value | Population size | Genetic diversity | References |
| Morocco sesame | ISSR | 0.002–0.350 | 31 | Low |
|
| Ethiopian sesame | ISSR | 0.56–1.00 | 10 | Moderate to high |
|
| African sesame (Ghana) | SSR | 0.80–0.96 | 25 | High |
|
| Indian sesame | RAPD | 0.510–0.885 | 47 | High |
|
| Chinese sesame | RAPD | 0.343–0.897 | 15 | Low to high |
|
| Indian sesame | RAPD | – | 9 | Low |
|
| SSR | 0.167–0.867 | 47 | Low to high |
| |
| African sesame | SSR | 0.51–0.60 | 48 | Moderate |
|
| Ugandan sesame landrace | nSSR | 0.56 | 121 | Moderate |
|
| EST-SSRs | 0.26 | 121 | Low | ||
| Indian sesame | RAPD | 0.130 | 44 | Low |
|
| ISSR | 0.675 | 44 | High | ||
| SSR | 0.404–0.740 | 44 | Moderate to high | ||
| SSR | 0.37–0.74 | 60 | Moderate to high |
| |
| Chinese sesame | SSR | 0.40 | 120 | Low |
|
| In-Del | 0.30 | 120 | Low | ||
| Indian sesame | SSRs | 0.298–0.912 | – | Low to high |
|
| Sudanese sesame | RAPD | – | 10 | Low |
|
FIGURE 3Variability in sesame germplasm for agro-morphological traits. (A) Internode stem length, (B) branching pattern, (C) leaf shape, (D) locules per sesame capsule, (E) capsule length, and (F) seed coat color.
Genes for oil-related contents in sesame.
| Gene | Function | Trait | References |
|
| Encodes lipase and plays an essential role in the oil metabolic pathway | Oil biosynthesis |
|
|
| Encodes lipase and plays an essential role in the oil metabolic pathway | Oil biosynthesis | |
|
| Indirectly involved in oil biosynthesis | Oil biosynthesis | |
|
| Belongs to NAC transcription family and indirectly involved in the oil metabolic pathway | Oil biosynthesis | |
|
| Maintains fatty acid composition through palmitic acid biosynthesis in endoplasmic reticulum | Oil biosynthesis | |
|
| Maintains fatty acid composition through triacylglycerol biosynthesis in endoplasmic reticulum | Oil biosynthesis | |
|
| Predicted to encode oleic acid desaturase, which converts oleic acid to linoleic acid in endoplasmic reticulum | Fatty acid biosynthesis | |
|
| Fatty acid biosynthesis by increasing oleic acid content | Fatty acid biosynthesis | |
|
| Converts various phytyl quinol pathway intermediates to their corresponding tocopherols | γ-tocopherol biosynthesis |
|
|
| Synthesizes vitamin E from γ-tocopherol | α-tocopherol synthesis | |
|
| Synthesis of omega-6 and omega-3 fatty acids by adding a double bond at the 12th and 15th carbon position | High linoleate or linoleneate content | |
|
| Converts S-adenosyl-L-methionine to S-adenosyl-L-homocysteine | High β-sitosterol content |
Genes related to morphological traits in sesame.
| Gene | Function | Trait | References |
|
| Auxin-induced gene involved in ethylene biosynthesis | Capsule phenotype and leaf width |
|
|
| Regulates seed germination and anthesis | Flowering | |
|
| Regulates anthesis | Flowering | |
|
| Negatively regulates cell elongation, lateral root formation, and hypocotyl length | Plant height and oilseed yield | |
|
| Flower lip color development by mediating anthocyanin biosynthetic pathway | Flower lip color | |
| Codes for aminohydrolase which modulates the activity of auxin in auxin signaling pathway | Plant height and oilseed yield |
| |
|
| Regulates the expression of anthesis related genes controlled by photoperiod | Flowering |
|
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| Encodes a transcription repressor KAN1 (KANADI1) protein which regulates abaxial identity, leaf growth, and meristem formation | Leaf curling and capsule indehiscence |
|
Genes involved in lignin biosynthesis in sesame.
| Gene | Function | Trait | References |
|
| Encoded by gene | Sesamin biosynthesis |
|
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| Responsible for sesamin oxygenation to form sesamolin and sesaminol | Sesamolin biosynthesis |
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Genes for abiotic stress tolerance in sesame.
| Gene | Function | Abiotic stress | References |
|
| Multiple biological processes, including anthesis, seed maturation, embryogenesis | Drought, salinity, heat, and waterlogging stress |
|
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| Plant growth and development | Waterlogging stress |
|
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| ATP-binding cassette transporters | Salinity stress |
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| Hydrolysis of glycosidic bonds | Salt stress | |
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| Late embyogenesis abundant protein | Salt stress | |
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| Involved in GABA synthesis | Salt stress | |
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| Biosynthesis of raffinose family oligosaccharides | Salt stress | |
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| Biosynthesis of mannitol | Salt stress | |
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| Na+/H+ transporter gene | Salt stress | |
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| Transcriptional activation | Heat stress |
|
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| Maintains cellular osmolarity by compartmentalizing solutes, altering metabolites, and activating reactive oxygen species (ROS) scavenging system | Oxidative stress | |
|
| Binds to specific DRE/CRT elements | Drought stress |
|
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| Phytohormone signal transduction | Drought and waterlogging stress |
|
|
| Multiple biological processes, such as anthesis, cell cycle control, morphogenesis | Waterlogging stress |
|
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| Biosynthesis of oligosaccharide raffinose; ROS scavenger | Waterlogging stress |
|
|
| Possible key enzyme in ABA biosynthesis | Drought stress | |
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| Amino acid metabolism (lysine) | Drought stress | |
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| Amino acid metabolism (lysine) through the saccharopine pathway | Drought stress | |
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| Removing ROS that cause oxidative damage to cells | Abiotic stresses, particularly drought | |
|
| Biogenesis of ABA and gibberellins | Drought stress |
|
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| Root development | Drought stress | |
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| Plant defense response | Drought stress | |
|
| Modulates polyamine (putrescine, spermidine, spermine) levels and ROS homeostasis | Drought stress | |
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| Regulates multiple genes | Osmotic stress | |
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| Catalyzes the dephosphorylation of substrate and participates in various signaling pathways in plants | Drought stress |
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Traits related to yield enhancement in sesame under normal and stress conditions.
| Traits | Gene/genotype/molecules | Condition | References |
| Drought stress tolerance | Silica, molybdenum, boron | Stress |
|
| Drought stress tolerance | Selenium | Stress |
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| Drought stress tolerance | Salicylic acid and kinetin | Stress |
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| Drought stress tolerance | Sesame mutants “ML2-5” and “ML2-10” | Stress |
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| Waterlogging stress tolerance | Stress |
| |
| Waterlogging, drought stress tolerance | WRKY TFs (Transcription factors) | Stress |
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| Waterlogging stress tolerance | Cultivar Zhongzhi No. 13 | Stress |
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| Heat stress tolerance | JCS 2846, JCS 2892, JCS 3102, and JCS 3258 | Stress |
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| Salinity stress tolerance | TS-5 genotype | Stress |
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| Drought stress tolerance | SI-1025, SI-205, SI2138-2, KM-13 genotypes | Stress |
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| Waterlogging stress tolerance | SSR marker (ZM428) | Stress |
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| Waterlogging stress tolerance | QTL (qEZ10CHL07, qEZ10ZCL07, qWH10CHL09, qWH10ZCL09, qEZ09ZCL13, qWH09CHL15) | Normal | |
| Non-shattering | Paloma, SW 16, SW17, Baco, and UCR3 | Normal |
|
| Early maturity (60-80 d) | Ye-Kyaw, Pat-Le-War-Hmyaung, Man-Shwe-Wa, She-Ka-lay, Mai-Thi-hla | Normal | |
| Monostem | Victoria, Aida, Valya, and Nevena | Normal | |
| 3 capsule/1 capsule | Zhongzhi13/Baizhima | Normal |
|
| Oil content | Normal |
Genes associated with biotic stress tolerance in sesame.
| Gene | Function | Biotic stress | References |
| Defense marker gene for JA/ET pathway; upregulated in sesame infected with | Root rot |
| |
| ERF (Ethylene-responsive factor) | Defense marker gene for JA/ET pathway; upregulated in sesame infected with | Dry root rot | |
| Defense marker gene for JA/ET pathway; upregulated in sesame infected with | Dry root rot | ||
| Marker gene for SA signaling; upregulated in sesame infected with | Dry root rot | ||
| Marker gene for SA signaling; upregulated in sesame infected with | Dry root rot | ||
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| Basic helix-loop-helix |
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| Leucine-rich repeat receptor-like kinase |
| |
| RLK (Serine threonine kinase) | Signal reception and key role in signaling pathway during pathogen recognition | Charcoal rot | |
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| phytoplasmal effector causing phyllody symptoms 1 | Phyllody |
|
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| SAP54 Like Protein of Sesame Phyllody | Phyllody |
List of microRNA (miRNAs) observed in sesame and their predicted target.
| miRNA | Target | Predicted target description | References |
| miR5368 | Targets HSP21 (21 kDa Heat Shock Protein) involved in counteracting osmotic stress and cell protection |
| |
| miR156/157 | Targets | ||
| miR160 | Targets | ||
| miR-n32 | Targets | ||
| miR-144 | Targets | ||
| miR-408 | Targets | ||
| miR-396 | Targets | ||
| miR-395 | Targets | ||
| miR-166 | Targets | ||
| Sin-miR396a-5p | XM_011079770.2 |
| |
| Sin-miR5658 | XM_011099043.2 | ||
| Sin-miR5658 | XM_011080551.2 | ||
| Sin-miR8030-3p | XM_011096846.2 | ||
| XM_011094724.2 | |||
| Sin-miR5658 | NBS-LRR (Nucleotide-binding site leucine-rich repeat) | ||
| Sin-miR8140 | XM_011087380.2 | ||
| XM_011091156.2 | |||
| XM_011075157.2 | VAN3-binding protein (LOC105158406) | ||
| XM_020693528.1 | RNA polymerase sigma factor sigE, chloroplastic/mitochondrial (LOC105160679) | ||
| XM_020694796.1 |
List of transgenic sesame developed for different traits.
| Gene name | CDS size (bp) | Gene isolated from | Gene function | Trait observed in transgenics developed | References |
|
| Triacylglycerol biosynthesis | Increased triacylglycerol biosynthesis |
| ||
| 744 |
| Maintains cell osmolarity by solute division and structural or metabolic alterations | Improved drought, salinity, and oxidative stress |
| |
| 1,140 | Soybean | Encodes enzyme which introduces the third double bond into linoleic acid precursors to produce ALA (α-linoleic acid) | Improved oil content in seed |
| |
|
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| Hydrolysis of phytic acid | Production of phytase protein |
| |
|
| 450 |
| Activates Ca2+ cascade and maintains cells in excitatory state; biosynthetic activity of secondary metabolites | Enhances biosynthetic activities of phenylpropane derivatives |
|
|
| |||||
|
| 1,800 |
| Converts colorless substrate to colored form | Reporter gene |
|
| 552 |
| Codes for phosphinothricin acetyltransferase, a useful selectable marker | Provides resistance against herbicide “Basta” |
| |
| 795, 1,800 |
| Provides resistance against antibiotic kanamycin; converts colorless substrate to colored form | Selection marker for plants, reporter gene |
| |
|
| 1,800 |
| Converts colorless substrate to colored form | Reporter gene for transformation |
|
|
| 1,800 |
| Converts colorless substrate to colored form | Reporter gene for transformation |
|