Literature DB >> 35599262

A fit-less approach to the elasticity of the handles in optical tweezers experiments.

Alessandro Mossa1,2, Ciro Cecconi3,4.   

Abstract

The elastic properties of the double-stranded DNA handles used in optical tweezers experiments on biomolecules are customarily modeled by an extensible worm-like chain model. Fitting such a model to experimental data, however, is no trivial task, as the function depends on four parameters in a highly non-linear fashion. We hereby propose a method to bypass the fitting procedure and obtain an empirical force vs. extension curve that accurately reproduces the elasticity of the handles.
© 2022. European Biophysical Societies' Association.

Entities:  

Keywords:  Data analysis; Optical tweezers

Mesh:

Substances:

Year:  2022        PMID: 35599262     DOI: 10.1007/s00249-022-01603-2

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  13 in total

1.  Mechanical Folding and Unfolding of Protein Barnase at the Single-Molecule Level.

Authors:  Anna Alemany; Blanca Rey-Serra; Silvia Frutos; Ciro Cecconi; Felix Ritort
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Single-molecule folding mechanisms of the apo- and Mg(2+)-bound states of human neuronal calcium sensor-1.

Authors:  Mohsin M Naqvi; Pétur O Heidarsson; Mariela R Otazo; Alessandro Mossa; Birthe B Kragelund; Ciro Cecconi
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

3.  Estimating the persistence length of a worm-like chain molecule from force-extension measurements.

Authors:  C Bouchiat; M D Wang; J Allemand; T Strick; S M Block; V Croquette
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

4.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

5.  The complex folding behavior of HIV-1-protease monomer revealed by optical-tweezer single-molecule experiments and molecular dynamics simulations.

Authors:  M Caldarini; P Sonar; I Valpapuram; D Tavella; C Volonté; V Pandini; M A Vanoni; A Aliverti; R A Broglia; G Tiana; C Cecconi
Journal:  Biophys Chem       Date:  2014-08-14       Impact factor: 2.352

6.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

7.  Effects of Ligand Binding on the Energy Landscape of Acyl-CoA-Binding Protein.

Authors:  Punam Sonar; Luca Bellucci; Alessandro Mossa; Pétur O Heidarsson; Birthe B Kragelund; Ciro Cecconi
Journal:  Biophys J       Date:  2020-09-24       Impact factor: 4.033

8.  Direct observation of chaperone-induced changes in a protein folding pathway.

Authors:  Philipp Bechtluft; Ruud G H van Leeuwen; Matthew Tyreman; Danuta Tomkiewicz; Nico Nouwen; Harald L Tepper; Arnold J M Driessen; Sander J Tans
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

9.  Determination of the elastic properties of short ssDNA molecules by mechanically folding and unfolding DNA hairpins.

Authors:  Anna Alemany; Felix Ritort
Journal:  Biopolymers       Date:  2014-12       Impact factor: 2.505

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.