Literature DB >> 35595857

Role of gene regulation and inter species interaction as a key factor in gut microbiota adaptation.

Shuang Gao1, Muhammad Imran Khan2,3, Fadia Kalsoom4, Zhen Liu5, Yanxin Chen6, Zhengli Chen7,8.   

Abstract

Gut microbiota is a class of microbial flora present in various eukaryotic multicellular complex animals such as human beings. Their community's growth and survival are greatly influenced by various factors such as host-pathogen, pathogen-environment and genetic regulation. Modern technologies like metagenomics have particularly extended our capacity to uncover the microbial treasures in challenging conditions like communities surviving at high altitude. Molecular characterizations by newly developed sequencing tools have shown that this complex interaction greatly influences microbial adaptation to the environment. Literature shows that gut microbiota alters the genetic expression and switches to an alternative pathway under the influence of unfavorable conditions. The remarkable adaptability of microbial genetic regulatory networks enables them to survive and expand in tough and energy-limited conditions. Variable prevalence of species in various regions has strengthened this initial evidence. In view of the interconnection of the world in the form of a global village, this phenomenon must be explored more clearly. In this regard, recently there has been significant addition of knowledge to the field of microbial adaptation. This review summarizes and shed some light on mechanisms of microbial adaptation via gene regulation and species interaction in gut microbiota.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Environmental stress; Epigenetic modification; Genetic regulatory networks; High altitude; Metagenome

Mesh:

Year:  2022        PMID: 35595857     DOI: 10.1007/s00203-022-02935-5

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  119 in total

Review 1.  Structure and evolution of transcriptional regulatory networks.

Authors:  M Madan Babu; Nicholas M Luscombe; L Aravind; Mark Gerstein; Sarah A Teichmann
Journal:  Curr Opin Struct Biol       Date:  2004-06       Impact factor: 6.809

2.  The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level.

Authors:  Wiley Barton; Nicholas C Penney; Owen Cronin; Isabel Garcia-Perez; Michael G Molloy; Elaine Holmes; Fergus Shanahan; Paul D Cotter; Orla O'Sullivan
Journal:  Gut       Date:  2017-03-30       Impact factor: 23.059

Review 3.  Homeostatic Immunity and the Microbiota.

Authors:  Yasmine Belkaid; Oliver J Harrison
Journal:  Immunity       Date:  2017-04-18       Impact factor: 31.745

4.  Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans.

Authors:  Jacob M Allen; Lucy J Mailing; Grace M Niemiro; Rachel Moore; Marc D Cook; Bryan A White; Hannah D Holscher; Jeffrey A Woods
Journal:  Med Sci Sports Exerc       Date:  2018-04       Impact factor: 5.411

5.  Enterotypes of the human gut microbiome.

Authors:  Manimozhiyan Arumugam; Jeroen Raes; Eric Pelletier; Denis Le Paslier; Takuji Yamada; Daniel R Mende; Gabriel R Fernandes; Julien Tap; Thomas Bruls; Jean-Michel Batto; Marcelo Bertalan; Natalia Borruel; Francesc Casellas; Leyden Fernandez; Laurent Gautier; Torben Hansen; Masahira Hattori; Tetsuya Hayashi; Michiel Kleerebezem; Ken Kurokawa; Marion Leclerc; Florence Levenez; Chaysavanh Manichanh; H Bjørn Nielsen; Trine Nielsen; Nicolas Pons; Julie Poulain; Junjie Qin; Thomas Sicheritz-Ponten; Sebastian Tims; David Torrents; Edgardo Ugarte; Erwin G Zoetendal; Jun Wang; Francisco Guarner; Oluf Pedersen; Willem M de Vos; Søren Brunak; Joel Doré; María Antolín; François Artiguenave; Hervé M Blottiere; Mathieu Almeida; Christian Brechot; Carlos Cara; Christian Chervaux; Antonella Cultrone; Christine Delorme; Gérard Denariaz; Rozenn Dervyn; Konrad U Foerstner; Carsten Friss; Maarten van de Guchte; Eric Guedon; Florence Haimet; Wolfgang Huber; Johan van Hylckama-Vlieg; Alexandre Jamet; Catherine Juste; Ghalia Kaci; Jan Knol; Omar Lakhdari; Severine Layec; Karine Le Roux; Emmanuelle Maguin; Alexandre Mérieux; Raquel Melo Minardi; Christine M'rini; Jean Muller; Raish Oozeer; Julian Parkhill; Pierre Renault; Maria Rescigno; Nicolas Sanchez; Shinichi Sunagawa; Antonio Torrejon; Keith Turner; Gaetana Vandemeulebrouck; Encarna Varela; Yohanan Winogradsky; Georg Zeller; Jean Weissenbach; S Dusko Ehrlich; Peer Bork
Journal:  Nature       Date:  2011-04-20       Impact factor: 49.962

6.  Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites.

Authors:  Pedro Almeida; Raquel Barbosa; Douda Bensasson; Paula Gonçalves; José Paulo Sampaio
Journal:  Mol Ecol       Date:  2017-03-22       Impact factor: 6.185

7.  Host genetic variation impacts microbiome composition across human body sites.

Authors:  Ran Blekhman; Julia K Goodrich; Katherine Huang; Qi Sun; Robert Bukowski; Jordana T Bell; Timothy D Spector; Alon Keinan; Ruth E Ley; Dirk Gevers; Andrew G Clark
Journal:  Genome Biol       Date:  2015-09-15       Impact factor: 13.583

Review 8.  Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.

Authors:  Shirley Bikel; Alejandra Valdez-Lara; Fernanda Cornejo-Granados; Karina Rico; Samuel Canizales-Quinteros; Xavier Soberón; Luis Del Pozo-Yauner; Adrián Ochoa-Leyva
Journal:  Comput Struct Biotechnol J       Date:  2015-06-09       Impact factor: 7.271

9.  Glyphosate, but not its metabolite AMPA, alters the honeybee gut microbiota.

Authors:  Nicolas Blot; Loïs Veillat; Régis Rouzé; Hélène Delatte
Journal:  PLoS One       Date:  2019-04-16       Impact factor: 3.240

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