Literature DB >> 35592546

The EWAS Catalog: a database of epigenome-wide association studies.

James R Staley1,2, Matthew Suderman1,2, Thomas Battram1,2, Paul Yousefi1,2, Gemma Crawford1,2, Claire Prince1,2, Mahsa Sheikhali Babaei1,2, Gemma Sharp1,2, Charlie Hatcher1,2, María Jesús Vega-Salas3, Sahar Khodabakhsh3, Oliver Whitehurst2, Ryan Langdon1,2, Luke Mahoney2, Hannah R Elliott1,2, Giulia Mancano1,2, Matthew A Lee1,2, Sarah H Watkins1,2, Abigail C Lay4, Gibran Hemani1,2, Tom R Gaunt1,2, Caroline L Relton1,2.   

Abstract

Epigenome-wide association studies (EWAS) seek to quantify associations between traits/exposures and DNA methylation measured at thousands or millions of CpG sites across the genome. In recent years, the increase in availability of DNA methylation measures in population-based cohorts and case-control studies has resulted in a dramatic expansion of the number of EWAS being performed and published. To make this rich source of results more accessible, we have manually curated a database of CpG-trait associations (with p<1x10 -4) from published EWAS, each assaying over 100,000 CpGs in at least 100 individuals. From January 7, 2022, The EWAS Catalog contained 1,737,746 associations from 2,686 EWAS. This includes 1,345,398 associations from 342 peer-reviewed publications. In addition, it also contains summary statistics for 392,348 associations from 427 EWAS, performed on data from the Avon Longitudinal Study of Parents and Children (ALSPAC) and the Gene Expression Omnibus (GEO). The database is accompanied by a web-based tool and R package, giving researchers the opportunity to query EWAS associations quickly and easily, and gain insight into the molecular underpinnings of disease as well as the impact of traits and exposures on the DNA methylome. The EWAS Catalog data extraction team continue to update the database monthly and we encourage any EWAS authors to upload their summary statistics to our website. Details of how to upload data can be found here: http://www.ewascatalog.org/upload. The EWAS Catalog is available at http://www.ewascatalog.org. Copyright:
© 2022 Battram T et al.

Entities:  

Keywords:  ALSPAC; EWAS; database; epigenetics; epigenome-wide

Year:  2022        PMID: 35592546      PMCID: PMC9096146.2          DOI: 10.12688/wellcomeopenres.17598.2

Source DB:  PubMed          Journal:  Wellcome Open Res        ISSN: 2398-502X


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6.  Cohort Profile: the Avon Longitudinal Study of Parents and Children: ALSPAC mothers cohort.

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7.  MethHC: a database of DNA methylation and gene expression in human cancer.

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Authors:  Mengwei Li; Dong Zou; Zhaohua Li; Ran Gao; Jian Sang; Yuansheng Zhang; Rujiao Li; Lin Xia; Tao Zhang; Guangyi Niu; Yiming Bao; Zhang Zhang
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Review 2.  Further Introduction of DNA Methylation (DNAm) Arrays in Regular Diagnostics.

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Journal:  Clin Epigenetics       Date:  2022-07-05       Impact factor: 7.259

4.  Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures.

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Journal:  Aging Cell       Date:  2022-05-12       Impact factor: 11.005

6.  Maternal Mediterranean diet in pregnancy and newborn DNA methylation: a meta-analysis in the PACE Consortium.

Authors:  Leanne K Küpers; Sílvia Fernández-Barrés; Aayah Nounu; Chloe Friedman; Ruby Fore; Giulia Mancano; Dana Dabelea; Sheryl L Rifas-Shiman; Rosa H Mulder; Emily Oken; Laura Johnson; Mariona Bustamante; Vincent W V Jaddoe; Marie-France Hivert; Anne P Starling; Jeanne H M de Vries; Gemma C Sharp; Martine Vrijheid; Janine F Felix
Journal:  Epigenetics       Date:  2022-03-02       Impact factor: 4.861

7.  Multi-Omic Approaches to Identify Genetic Factors in Metabolic Syndrome.

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8.  Spatiotemporal specificity of correlated DNA methylation and gene expression pairs across different human tissues and stages of brain development.

Authors:  Kangli Wang; Rujia Dai; Yan Xia; Jianghua Tian; Chuan Jiao; Tatiana Mikhailova; Chunling Zhang; Chao Chen; Chunyu Liu
Journal:  Epigenetics       Date:  2021-10-21       Impact factor: 4.861

9.  DNA methylation in relation to gestational age and brain dysmaturation in preterm infants.

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Journal:  Brain Commun       Date:  2022-03-08

10.  Complex trait methylation scores in the prediction of major depressive disorder.

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Journal:  EBioMedicine       Date:  2022-04-29       Impact factor: 11.205

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