| Literature DB >> 35585934 |
Qi Rui Li1,2, Xu Zhang2, Yan Lin2, Milan C Samarakoon3, Kevin David Hyde4, Xiang Chun Shen2, Wan Qing Liao5, Anuruddha Karunarathna4, Si Han Long2, Ying Qian Kang6, Ji Chuan Kang1.
Abstract
Three arecophila-like fungal samples were collected on dead culms of gramineous plants in China. Morphological studies of our new collections and the herbarium specimen of Arecophilagulubiicola (generic type) were conducted and the morphological affinity of our new collections with Arecophila was confirmed. Maximum likelihood and Bayesian analyses using combined ITS, LSU, rpb2 and β-tubulin data from our collections revealed the phylogeny of Cainiaceae. The monospecific genus Alishanica (type species Al.miscanthi), which had been accepted in Cainiaceae, is revisited and synonymised under Arecophila. Based on morphology and phylogeny, Arecophilaaustralis sp. nov. and A.clypeata sp. nov. are introduced as new species, while A.miscanthi is a new record for China. All the new collections are illustrated and described. Qi Rui Li, Xu Zhang, Yan Lin, Milan C. Samarakoon, Kevin David Hyde, Xiang Chun Shen, Wan Qing Liao, Anuruddha Karunarathna, Si Han Long, Ying Qian Kang, Ji Chuan Kang.Entities:
Keywords: Cainiaceae; gramineous plants; phylogeny; taxonomy
Year: 2022 PMID: 35585934 PMCID: PMC9021158 DOI: 10.3897/mycokeys.88.79475
Source DB: PubMed Journal: MycoKeys ISSN: 1314-4049 Impact factor: 3.111
Sequences used for phylogenetic analyses in this study.
| Species | Strain number | Status | GenBank accession numbers | References | |||
|---|---|---|---|---|---|---|---|
| ITS | LSU |
| β-tubulin | ||||
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| CBS 532.94 | – |
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| MFLUCC 11-0617 | HT |
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| N/A | N/A |
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| MFLU 16-2479 | HT |
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| N/A | N/A | Senanayake et al. (2019, submitted directly) |
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| MFLU 18-0794 | HT |
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| AFTOL-ID 1229 |
| N/A |
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| N/A | Schoch (2008, submitted directly) |
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| ICMP 6889 | – | N/A |
|
| N/A |
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| MFLUCC 15-0003 | HT |
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| N/A | N/A |
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| ICMP 4207 | – | N/A |
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| MFLUCC 15-0002 | HT |
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| GZUCC0112 | HT |
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| N/A |
| This study |
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| GZUCC0124 | – |
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| N/A | N/A | This study |
|
| HKUCC 4794 | – | N/A |
| N/A | N/A |
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| GZUCC0110 | HT |
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| N/A | This study |
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| GZUCC0127 | – |
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| N/A | N/A | This study |
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| GZUCC0122 | – |
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| N/A | N/A | This study |
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| MFLU 19-2333 | HT |
|
| N/A | N/A |
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| HKUCC 6487 | – | N/A |
| N/A | N/A |
| |
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| MFLUCC 15-0002 | HT |
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| MFLUCC 13-0444 | HT | N/A |
| N/A | N/A |
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| CBS 124762 | HT |
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| N/A | N/A |
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| Cr2 = CBS 142771 | HT |
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| BR = CBS 142772 | HT |
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| CMW 31067 | – |
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| CBS 138003 | HT |
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| N/A |
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| CBS 123.58 | T |
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| MFLUCC 17-2139 | HT |
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| N/A | N/A | Liu et al. (2017) |
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| MUCL 51395 | ET |
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| MFLUCC 15-0539 | HT |
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| N/A | N/A |
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| CBS 136.62 | – |
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| N/A | N/A |
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| MFLUCC 15-0540 | – |
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| N/A | N/A |
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| ATCC 28093 | – |
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| CBS 139896 | HT |
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| N/A | N/A |
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| CBS 579.71 | HT |
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| N/A | N/A |
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| CPC 26539 | HT |
|
| N/A |
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| CBS 374.66 | – |
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| MFLUCC 15-0541 | HT |
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| N/A | N/A |
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| MFLUCC 15-0542 | HT |
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| N/A | N/A |
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| CBS 141463 | ET |
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| N/A | N/A |
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| CBS 593.74 | HT |
|
| N/A | N/A |
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| CBS 281.77 | IT |
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| N/A | N/A |
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| STMA 14087 | – |
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| CBS 693.83 | – |
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| Lombard et al (2014, submitted directly) |
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| CBS 145655 | HT |
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| CPC 29580 | HT |
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| N/A | N/A | Koppel et al. (2017) |
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| CBS 113277 | – |
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| MFLUCC 15-0670 | HT |
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| N/A |
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| MFLUCC 11-0018 | – |
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| N/A | N/A |
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| ATCC MYA-4417 | – |
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| N/A | N/A | Igo et al. (2009, direct submission) |
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| EPE = CBS 142773 | ET |
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| RQ = CBS 142774 | HT |
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| MFLUCC 13-0625 | – |
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| N/A | N/A |
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| CBS 291.87 | – |
| N/A |
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| CBS 208.87 | NT |
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| CBS 143622 | HT |
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| CBS 144409 | HT |
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| AFTOL-ID 1249 | HT |
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| UME 31430 | – | - |
| N/A | N/A | Smith et al. (2002, submitted directly) |
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| MUCL51264 | ET |
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| MFLU 19-0719 | HT |
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| N/A |
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| MFLU 15-0393 | HT |
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| N/A | N/A |
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| CBS 119016 | ET |
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| CBS 163.93 | – |
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| CBS 140409 | NT |
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| CBS 128196 | HT |
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| CBS 143630 | ET |
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| MFLUCC 17-1485 | HT |
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| N/A | N/A |
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| LG8 | HT |
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| N/A |
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| LG21 | ET |
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| LF1 | HT |
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| N/A |
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| LG27 | HT |
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| N/A |
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| LT2 | ET |
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| MBU | – |
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| N/A | N/A |
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| CBS 111123 | – |
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| N/A | N/A |
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| CBS 138864 | HT |
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| N/A | N/A |
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| MFLUCC 15-0281 | HT |
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| N/A |
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| MFLUCC 15-0806 | HT |
|
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| N/A |
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| MFLUCC 18-0269 | HT |
|
| N/A | N/A |
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| CBS 131312 | HT |
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| CBS 128.80 | – |
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| N/A | N/A |
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| CBS 656.78 | HT |
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| MFLUCC 15-0545 | – |
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| N/A | N/A |
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| CBS 129022 | – |
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| N/A | N/A |
|
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| CBS 123529 | HT |
|
| N/A | N/A | |
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| CBS 143169 | HT |
|
| N/A | N/A |
|
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| MFLUCC 14-0988 | HT |
|
| N/A | N/A |
|
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| CBS 145532 | HT |
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| N/A | N/A |
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| CBS 115445 | HT |
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| CBS 359.61 | – |
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| CBS 140403 | ET |
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| SMH 1291 | – | N/A |
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| N/A |
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| CBS 723.96 | – |
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| CBS 616.83 | HT |
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| MFLUCC 15-0831 | HT |
|
| N/A | N/A |
|
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| DAOM 240257 | – |
|
| N/A | N/A | Hambleton et al. (2010, submitted directly) |
|
| MFLUCC 12-0808 | HT |
|
| N/A | N/A | Senanayake et al. (2021, submitted directly) |
|
| BRIP 56959 | – |
|
| N/A | N/A |
|
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| CBS 143502 | – |
|
| N/A |
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| CBS 122620 | ET |
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| MFLUCC 13-0115 | – |
|
| N/A | N/A |
|
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| MUCL 49884 | – |
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Note. Type specimens are labelled with HT (holotype), ET (epitype) and IT (isotype), T (Type). N/A: not available.
Figure 1.Phylogenetic tree, based on a combined ITS, LSU, rpb2 and β-tubulin gene dataset. Numbers close to each node represent Maximum Likelihood bootstrap values (≥ 75%) and Bayesian posterior probabilities (≥ 0.95). The hyphen (“–”) means a value lower than 75% (BS) or 0.95 (PP). New taxa are marked in red. Type materials are marked with T after the strains. The tree is rooted to (CBS 532.94), (CBS 374.66) and (CBS 723.96).
Figure 2.(holotype) A material B ascoma on the surface of host C section of ascoma D peridium E paraphyses F, G ascus apex with a J+, apical ring (stained in Melzer’s reagent) H–K asci with ascospores L–O ascospores surrounded by a wide mucilaginous sheath (O stained in India ink). Scale bars: 300 μm (B); 50 μm (C); 5 μm (D–O).
Figure 3.(holotype) A material B ascomata on the surface of host C, D section of ascomata E peridium F, G ascus apex with a J+, apical ring (stained in Melzer’s reagent) H–K asci with ascospores L–O ascospores. Scale bars: 500 μm (B, C); 100 μm (D); 10 μm (E, H–K); 5 μm (F, G, L–O).
Figure 4.(BRIP 23002a, holotype) A, B herbarium material with label C ascomata on the host D, E sections of ascomata F paraphyses G–J asci K peridium L, M wedge-shaped, J+ apical ring bluing in Melzer’s reagent N–Q ascospores. Scale bars: 50 μm (D, E); 5 μm (F–Q).
Figure 5.(GZUH0122) A, B ascomata on the surface of host C paraphyses and asci D section of ascoma E peridium F, G apical rings H–K asci with ascospores M–P ascospores. Scale bars: 50 μm (C, D); 10 μm (E, F–K); 5 μm (L–P).
Synopsis of the species of .
| Species | Host |
| Ascomata | Asci | Ascal ring | Ascospores | Distribution |
|---|---|---|---|---|---|---|---|
|
|
| Present | 420–560 × 290–380 µm, globose to subglobose | 140–230 × 15.5–24 µm | 4–5 × 2.5–3 μm, trapezoidal, J+ | 22.5–29 × 8–11 µm, wall striate, mucilaginous sheath | China (Guizhou) |
|
| Absent | 500–560 × 294–350 µm, globose to subglobose | 132.5–140 × 7.5–8 µm | 2.5–3 µm in diam., ca. 2.5 µm high, wedge-shaped, J+ | 19–22.5 × 5.5–7 µm, slightly tapering at the ends, wall striate, mucilaginous sheath | Hong Kong | |
|
| Absent | 520 × 390 µm, subglobose | 160–190 × 14–20 µm | 4-4.8 µm diam., 3.2-4 µm high, wedge-shaped, J+ | 24–33 × 5.5–9 µm, wall striate, verrucose, mucilaginous sheath | Brunel, Indonesia | |
|
|
| Minute | 400–700 × 300–400 µm, subglobose | 150–190 × 9–10 µm | 3.5–4.5 diam., 1.5–2 µm high, wedge-shaped, J+ | 15–23 × 5.5–7 µm, wall striate, covered by pronounced verrucose ornamentation, mucilaginous sheath | Spain |
|
| Present | 90–100 × 42–105 µm, subglobose or ellipsoidal | 132.5–157.5 × 7.5–9 µm | 3.5–4 µm in diam., 2–2.5 µm high, wedge-shaped, J+, with a faint canal leading to the apex. | 29–31 × 5–5.5 µm, wall faint striate, mucilaginous sheath | Philippines, Hong Kong | |
|
| A unknown gramineous plant | Present | 367‒448 × 278‒363 µm, subglobose to globose | 180–245 × 10.5–14.5 µm | 3–4 × 3–4 μm, square-shaped, J+ | 18.5–22.5 × 6.5–9 µm, wall striate, mucilaginous sheath | China (Guizhou) |
|
|
| Absent | 400–600 µm diam., globose | 180–240 × 16–19 µm | 3.5–4. 5 µm diam., 1.5–2 µm high, wedge-shaped, J+ | 26–32 × 11–13 µm, wall striate | India |
|
|
| Absent | 460–520 × 180–260 µm, Subglobose or ellipsoidal | 175–220 × 11–16.5 µm | 3–4 µm diam., 1.5–2.0 µm high, discoid, J+ | 25-40 × 6.5–9 µm, wall weakly striate, verrucose, mucilaginous sheath | Malaysia |
|
| Present | 300–400 ×400–500 µm, globose or ovoid | 130–150 × 14–15 µm | 3–4 µm wide, 4–5 µm high, tubular, J+ | 16–20 × 8–10 µm, wall striate, foveate, surface aspect of numerous warts | USA | |
|
|
| Present | 290–400 × 140–190 μm, subglobose or lenticular | 107–145 × 11–13.5 μm | 3.2–4 µm diam., 2.4–3.2 µm high, cylindrical, J+ | 14.5–18.5 × 6–9 μm with a minutely verrucose wall, mucilaginous sheath | Papua New Guinea |
|
|
| Present | 283–296 × 272–277 µm, globose to subglobose | 147–189 × 10–13 μm | 3.5–4 µm broad, 2–2.5 µm high, wedge-shaped, J+ | 20–24 × 6–8 μm, wall striate, mucilaginous sheath. | China (Taiwan, Yunnan) |
|
|
| Absent | 350–460 × 320–400 µm, globose | 125–165 × 10–12 µm | 3.5–4 µm diam., 2–2.5 µm high, wedge-shaped, J+ | 20–25 × 6–7.5 µm, wall finely striate, mucilaginous sheath | Japan |
|
| Present | 400 × 360 µm, subglobose | 180–220 × 11–14 µm | 4–4.45 µm diam., 3–4.5 µm high, wedge-shaped, J+ | 20–26 × 6–8 µm, wall striate, finely verrucose, mucilaginous sheath | Brunei, Hong Kong, Indonesia | |
|
|
| Absent | 400–500 µm diam., subglobose | 140–205 × 11–13 µm | 4.5 µm diam., 2.5–4 µm high, wedge-shaped, J+ | 19–26 × 7–8 µm, wall striate, mucilaginous sheath | Malaysia |
|
|
| Absent | 420–525 × 350–420 µm high | 140–16 × 7–10 µm | Not blued by Melzer’s reagent | 20–24 × 6–8 µm, wall smooth or striated | Jamaica |
|
| Present | 480–560 × 280–320 µm, conical with flattened base | 110–112 × 10–12 µm, | 3.2 µm diam., 2.4 µm high, wedge-shaped, J+ | 17–26 × 7–9.5 µm, wall striate, mucilaginous sheath | Brunei, USA, Florida |