Literature DB >> 35584325

Kir7.1 disease mutant T153I within the inner pore affects K+ conduction.

Katie M Beverley1,2,3, Pawan K Shahi2,3, Meha Kabra2,3, Qianqian Zhao4, Joseph Heyrman2, Jack Steffen2, Bikash R Pattnaik1,2,3,5.   

Abstract

Inward-rectifier potassium channel 7.1 (Kir7.1) is present in the polarized epithelium, including the retinal pigmented epithelium. A single amino acid change at position 153 in the KCNJ13 gene, a substitution of threonine to isoleucine in the Kir7.1 protein, causes blindness. We hypothesized that the disease caused by this single amino acid substitution within the transmembrane protein domain could alter the translation, localization, or ion transport properties. We assessed the effects of amino acid side-chain length, arrangement, and polarity on channel structure and function. We showed that the T153I mutation yielded a full-length protein localized to the cell membrane. Whole cell patch-clamp recordings and chord conductance analyses revealed that the T153I mutant channel had negligible K+ conductance and failed to hyperpolarize the membrane potential. However, the mutant channel exhibited enhanced inward current when rubidium was used as a charge carrier, suggesting that an inner pore had formed and the channel was dysfunctional. Substituting with a polar, nonpolar, or short side-chain amino acid did not affect the localization of the protein. Still, it had an altered channel function due to differences in pore radius. Polar side chains (cysteine and serine) with inner pore radii comparable to wildtype exhibited normal inward K+ conductance. Short side chains (glycine and alanine) produced a channel with wider than expected inner pore size and lacked the biophysical characteristics of the wild-type channel. Leucine substitution produced results similar to the T153I mutant channel. This study provides direct electrophysiological evidence for the structure and function of the Kir7.1 channel's narrow inner pore in regulating conductance.

Entities:  

Keywords:  Kir7.1; electrophysiology; innerpore structure; pediatric blindness; potassium channels

Mesh:

Substances:

Year:  2022        PMID: 35584325      PMCID: PMC9273268          DOI: 10.1152/ajpcell.00093.2022

Source DB:  PubMed          Journal:  Am J Physiol Cell Physiol        ISSN: 0363-6143            Impact factor:   5.282


  38 in total

1.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

2.  A statistical model for identifying proteins by tandem mass spectrometry.

Authors:  Alexey I Nesvizhskii; Andrew Keller; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2003-09-01       Impact factor: 6.986

3.  The sodium channel has four domains surrounding a central pore.

Authors:  C Sato; M Sato; A Iwasaki; T Doi; A Engel
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

4.  Expression and permeation properties of the K(+) channel Kir7.1 in the retinal pigment epithelium.

Authors:  M Shimura; Y Yuan; J T Chang; S Zhang; P A Campochiaro; D J Zack; B A Hughes
Journal:  J Physiol       Date:  2001-03-01       Impact factor: 5.182

5.  A Novel KCNJ13 Nonsense Mutation and Loss of Kir7.1 Channel Function Causes Leber Congenital Amaurosis (LCA16).

Authors:  Bikash R Pattnaik; Pawan K Shahi; Meghan J Marino; Xinying Liu; Nathaniel York; Simran Brar; John Chiang; De-Ann M Pillers; Elias I Traboulsi
Journal:  Hum Mutat       Date:  2015-05-20       Impact factor: 4.878

Review 6.  Focus on Kir7.1: physiology and channelopathy.

Authors:  Mohit Kumar; Bikash R Pattnaik
Journal:  Channels (Austin)       Date:  2014       Impact factor: 2.581

7.  Abnormal Electroretinogram after Kir7.1 Channel Suppression Suggests Role in Retinal Electrophysiology.

Authors:  Pawan K Shahi; Xinling Liu; Bryce Aul; Andrea Moyer; Akshita Pattnaik; Jerod Denton; De-Ann M Pillers; Bikash R Pattnaik
Journal:  Sci Rep       Date:  2017-09-06       Impact factor: 4.379

8.  AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.

Authors:  Mihaly Varadi; Stephen Anyango; Mandar Deshpande; Sreenath Nair; Cindy Natassia; Galabina Yordanova; David Yuan; Oana Stroe; Gemma Wood; Agata Laydon; Augustin Žídek; Tim Green; Kathryn Tunyasuvunakool; Stig Petersen; John Jumper; Ellen Clancy; Richard Green; Ankur Vora; Mira Lutfi; Michael Figurnov; Andrew Cowie; Nicole Hobbs; Pushmeet Kohli; Gerard Kleywegt; Ewan Birney; Demis Hassabis; Sameer Velankar
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 19.160

9.  Ion currents through Kir potassium channels are gated by anionic lipids.

Authors:  Ruitao Jin; Sitong He; Katrina A Black; Oliver B Clarke; Di Wu; Jani R Bolla; Paul Johnson; Agalya Periasamy; Ahmad Wardak; Peter Czabotar; Peter M Colman; Carol V Robinson; Derek Laver; Brian J Smith; Jacqueline M Gulbis
Journal:  Nat Commun       Date:  2022-01-25       Impact factor: 14.919

10.  A constricted opening in Kir channels does not impede potassium conduction.

Authors:  Katrina A Black; Sitong He; Ruitao Jin; David M Miller; Jani R Bolla; Oliver B Clarke; Paul Johnson; Monique Windley; Christopher J Burns; Adam P Hill; Derek Laver; Carol V Robinson; Brian J Smith; Jacqueline M Gulbis
Journal:  Nat Commun       Date:  2020-06-15       Impact factor: 14.919

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  1 in total

Review 1.  Inward rectifier potassium (Kir) channels in the retina: living our vision.

Authors:  Katie M Beverley; Bikash R Pattnaik
Journal:  Am J Physiol Cell Physiol       Date:  2022-08-01       Impact factor: 5.282

  1 in total

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