Literature DB >> 35582656

Deep Generative Learning-Based 1-SVM Detectors for Unsupervised COVID-19 Infection Detection Using Blood Tests.

Abdelkader Dairi1,2, Fouzi Harrou3, Ying Sun3.   

Abstract

A sample blood test has recently become an important tool to help identify false-positive/false-negative real-time reverse transcription polymerase chain reaction (rRT-PCR) tests. Importantly, this is mainly because it is an inexpensive and handy option to detect the potential COVID-19 patients. However, this test should be conducted by certified laboratories, expensive equipment, and trained personnel, and 3-4 h are needed to deliver results. Furthermore, it has relatively large false-negative rates around 15%-20%. Consequently, an alternative and more accessible solution, quicker and less costly, is needed. This article introduces flexible and unsupervised data-driven approaches to detect the COVID-19 infection based on blood test samples. In other words, we address the problem of COVID-19 infection detection using a blood test as an anomaly detection problem through an unsupervised deep hybrid model. Essentially, we amalgamate the features extraction capability of the variational autoencoder (VAE) and the detection sensitivity of the one-class support vector machine (1SVM) algorithm. Two sets of routine blood tests samples from the Albert Einstein Hospital, S ao Paulo, Brazil, and the San Raffaele Hospital, Milan, Italy, are used to assess the performance of the investigated deep learning models. Here, missing values have been imputed based on a random forest regressor. Compared to generative adversarial networks (GANs), deep belief network (DBN), and restricted Boltzmann machine (RBM)-based 1SVM, the traditional VAE, GAN, DBN, and RBM with softmax layer as discriminator layer, and the standalone 1SVM, the proposed VAE-based 1SVM detector offers superior discrimination performance of potential COVID-19 infections. Results also revealed that the deep learning-driven 1SVM detection approaches provide promising detection performance compared to the conventional deep learning models.

Entities:  

Keywords:  COVID-19; deep learning; generative models; routine blood tests; unsupervised anomaly detection

Year:  2021        PMID: 35582656      PMCID: PMC8962827          DOI: 10.1109/TIM.2021.3130675

Source DB:  PubMed          Journal:  IEEE Trans Instrum Meas        ISSN: 0018-9456            Impact factor:   5.332


  25 in total

1.  Estimating the support of a high-dimensional distribution.

Authors:  B Schölkopf; J C Platt; J Shawe-Taylor; A J Smola; R C Williamson
Journal:  Neural Comput       Date:  2001-07       Impact factor: 2.026

Review 2.  A summary of the diagnostic and prognostic value of hemocytometry markers in COVID-19 patients.

Authors:  T A Khartabil; H Russcher; Ajam van der Ven; Y B de Rijke
Journal:  Crit Rev Clin Lab Sci       Date:  2020-06-22       Impact factor: 6.250

3.  Tensor Gradient L₀-Norm Minimization-Based Low-Dose CT and Its Application to COVID-19.

Authors:  Weiwen Wu; Jun Shi; Hengyong Yu; Weifei Wu; Varut Vardhanabhuti
Journal:  IEEE Trans Instrum Meas       Date:  2021-01-19       Impact factor: 4.016

4.  Routine Laboratory Blood Tests Predict SARS-CoV-2 Infection Using Machine Learning.

Authors:  He S Yang; Yu Hou; Ljiljana V Vasovic; Peter A D Steel; Amy Chadburn; Sabrina E Racine-Brzostek; Priya Velu; Melissa M Cushing; Massimo Loda; Rainu Kaushal; Zhen Zhao; Fei Wang
Journal:  Clin Chem       Date:  2020-11-01       Impact factor: 8.327

5.  Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR.

Authors:  Victor M Corman; Olfert Landt; Marco Kaiser; Richard Molenkamp; Adam Meijer; Daniel Kw Chu; Tobias Bleicker; Sebastian Brünink; Julia Schneider; Marie Luisa Schmidt; Daphne Gjc Mulders; Bart L Haagmans; Bas van der Veer; Sharon van den Brink; Lisa Wijsman; Gabriel Goderski; Jean-Louis Romette; Joanna Ellis; Maria Zambon; Malik Peiris; Herman Goossens; Chantal Reusken; Marion Pg Koopmans; Christian Drosten
Journal:  Euro Surveill       Date:  2020-01

6.  Machine Learning Approach to Predicting COVID-19 Disease Severity Based on Clinical Blood Test Data: Statistical Analysis and Model Development.

Authors:  Sakifa Aktar; Md Martuza Ahamad; Md Rashed-Al-Mahfuz; Akm Azad; Shahadat Uddin; Ahm Kamal; Salem A Alyami; Ping-I Lin; Sheikh Mohammed Shariful Islam; Julian Mw Quinn; Valsamma Eapen; Mohammad Ali Moni
Journal:  JMIR Med Inform       Date:  2021-04-13

7.  Domain Shifts in Machine Learning Based Covid-19 Diagnosis From Blood Tests.

Authors:  Theresa Roland; Carl Böck; Thomas Tschoellitsch; Alexander Maletzky; Sepp Hochreiter; Jens Meier; Günter Klambauer
Journal:  J Med Syst       Date:  2022-03-29       Impact factor: 4.920

8.  COVID-19 diagnosis by routine blood tests using machine learning.

Authors:  Matjaž Kukar; Gregor Gunčar; Tomaž Vovko; Simon Podnar; Peter Černelč; Miran Brvar; Mateja Zalaznik; Mateja Notar; Sašo Moškon; Marko Notar
Journal:  Sci Rep       Date:  2021-05-24       Impact factor: 4.379

9.  A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.

Authors:  Rohan P Joshi; Vikas Pejaver; Noah E Hammarlund; Heungsup Sung; Seong Kyu Lee; Al'ona Furmanchuk; Hye-Young Lee; Gregory Scott; Saurabh Gombar; Nigam Shah; Sam Shen; Anna Nassiri; Daniel Schneider; Faraz S Ahmad; David Liebovitz; Abel Kho; Sean Mooney; Benjamin A Pinsky; Niaz Banaei
Journal:  J Clin Virol       Date:  2020-06-10       Impact factor: 3.168

10.  Use of Machine Learning and Artificial Intelligence to predict SARS-CoV-2 infection from Full Blood Counts in a population.

Authors:  Abhirup Banerjee; Surajit Ray; Bart Vorselaars; Joanne Kitson; Michail Mamalakis; Simonne Weeks; Mark Baker; Louise S Mackenzie
Journal:  Int Immunopharmacol       Date:  2020-06-16       Impact factor: 4.932

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