| Literature DB >> 35578248 |
Burcu A Pazarlar1,2, Sanjay S Aripaka1, Viktor Petukhov3, Lars Pinborg1,4, Konstantin Khodosevich3, Jens D Mikkelsen5,6.
Abstract
Synaptic vesicle glycoprotein-2 (SV2) is a family of proteins consisting of SV2A, SV2B, and SV2C. This protein family has attracted attention in recent years after SV2A was shown to be an epileptic drug target and a perhaps a biomarker of synaptic density. So far, the anatomical localization of these proteins in the rodent and human brain have been reported, but co-expression of SV2 genes on a cellular level, their expressions in the human brain, comparison to radioligand binding, any possible regulation in epilepsy are not known. We have here analyzed the expression of SV2 genes in neuronal subtypes in the temporal neocortex in selected specimens by using single nucleus-RNA sequencing, and performed quantitative PCR in populations of temporal lobe epilepsy (TLE) patients and healthy controls. [3H]-UCB-J autoradiography was performed to analyze the correlation between the mRNA transcript and binding capacity to SV2A. Our data showed that the SV2A transcript is expressed in all glutamatergic and GABAergic cortical subtypes, while SV2B expression is restricted to only the glutamatergic neurons and SV2C has very limited expression in a small subgroup of GABAergic interneurons. The level of [3H]-UCB-J binding and the concentration of SV2A mRNA is strongly correlated in each patient, and the expression is lower in the TLE patients. There is no relationship between SV2A expression and age, sex, seizure frequency, duration of epilepsy, or whether patients were recently treated with levetiracetam or not. Collectively, these findings point out a neuronal subtype-specific distribution of the expression of the three SV2 genes, and the lower levels of both radioligand binding and expression further emphasize the significance of these proteins in this disease.Entities:
Keywords: Neocortex; SV2 paralogues; Temporal lobe epilepsy; [3H]-UCB-J; snRNA-seq
Mesh:
Substances:
Year: 2022 PMID: 35578248 PMCID: PMC9109314 DOI: 10.1186/s13041-022-00931-w
Source DB: PubMed Journal: Mol Brain ISSN: 1756-6606 Impact factor: 4.399
Primer information
| Gene | Gene ID | Sequence | Length (bp) | Product length (bp) | TM |
|---|---|---|---|---|---|
| SV2A human | F: 5′-AGCGTGATGTCCTGTGTCTC-3′ | 20 | 168 | 59.97 | |
| R: 5′-GCCAAAAGCTGTGGTCCTCTT-3′ | 21 | 59.96 | |||
| SV2B human | NM_001167580.2 | F: 5′-TGCCCTGTACTGTGTGATGG | 20 | 70 | 59.68 |
| R: 5′-CATGGCAAACCAAACCACGG | 20 | 60.60 | |||
| SV2C HUMAN | NM_014979.3 | F: 5′-ATGATCGGTGGCATCTACGC-3′ | 20 | 117 | 63.3 |
| R: 5′-GACGATGACAAACACACGCC-3′ | 20 | 62.6 | |||
| GAPDH human | NM_002046.7 | F: 5′-CATGAGAAGTATGACAACAGCCT-3′ | 23 | 113 | 58.49 |
| R: 5′-AGTCCTTCCACGATACCAAAGT-3′ | 22 | 59.10 |
Fig. 1Levels of SV2A (A), SV2B (B) and, SV2C (C) among cardinal subtypes of cortical neurons. Data presents expression levels of SV2A (A), SV2B (B) and, SV2C (C) transcripts among cardinal subtypes of GABAergic and Glutamatergic neurons in temporal neocortex of TLE (temporal lobe epilepsy) patients (n = 9) and non-epileptic postmortem controls (n = 10) by single nucleus RNA sequencing. Distribution of log-normalized expression (y-axis) per cell types (x-axis) is shown for SV2A (A), SV2B (B) and SV2C (C). First, 10%, 25%, 50%, 75% and 90% of expression were estimated for each patient and cell type. Then, trimmed means of these values across samples were estimated for each condition and cell type (trim = 0.3). These averaged values are shown with boxplots: the middle line represents median, lower and upper hinges correspond to quartiles (25% and 75%) and whiskers represent 10% and 90% of expression. When there are no whiskers present, the expression is 0 across all cells of a subtype. Left panels indicates Parvalbumin (Pvalb), Somatostatin (Sst), Inhibitor of DNA Binding-2 (Id-2), Vasoactive Intestinal Polypeptide (Vip) expressing neurons which are the main four cardinal classes of GABAergic neurons. Excitatory glutamatergic neurons of five principal layers in the cortex (i.e. L2, L3, L4, L5, and L6) were shown in the right panels
(The single cell data are derived from Pfisterer et al. [27])
Fig. 2Inter-paralogue correlations between SV2 mRNA levels in the temporal cortex of TLE patients. SV2A showed a significant positive correlation with SV2B (ρ = 0.5189, p = 0.0133, 95% confidence interval) (A), but SV2A is not correlated with SV2C (ρ = − 0.1462, p = 0.51) (B). There is also no correlation between SV2B and SV2C (ρ = 0.1158, p = 0.60) (C). p < 0.05 is considered statistically significant for all comparisons. ρ (rho) represents the Spearmen’s correlation coefficient (n = 22). Investigated correlations were linear
Fig. 3[3H]-UCB-J binding level in cortex tissue and correlation of SV2A mRNA level with [3H]-UCB-J binding. Quantitative autoradiographic measurements of cortical [3H]-UCB-J density is expressed as specific binding in nCi/mg tissue in cortex of TLE (temporal lobe epilepsy) patients (n = 10) and non-epileptic postmortem controls (n = 9) (Student’s t-test; p < 0.001, t = 5.506, df = 17, 95% confidence interval). All the values are in Mean ± SD (A). Positive correlation between SV2A gene expression levels and [3H]-UCB-J binding levels of patients (n = 10, r = 0.72, p = 0.018, 95% confidence interval). r represents the Pearson’s correlation coefficient. p < 0.05 is considered statistically significant for all comparisons. Investigated correlations were linear. B Four different representative autoradiogram images of cortex from both TLE patients and controls. Non-specific binding was shown with 10 mM levetiracetam addition to incubation solution of adjacent slice (C)