| Literature DB >> 35576979 |
Hui Xing Tan1, Desmond Chun Hwee Teo1, Dongyun Lee2, Chungsoo Kim3, Jing Wei Neo1, Cynthia Sung1,4, Haroun Chahed1, Pei San Ang1, Doreen Su Yin Tan5, Rae Woong Park2,3, Sreemanee Raaj Dorajoo1.
Abstract
OBJECTIVES: The aim of this study was to characterize the benefits of converting Electronic Medical Records (EMRs) to a common data model (CDM) and to assess the potential of CDM-converted data to rapidly generate insights for benefit-risk assessments in post-market regulatory evaluation and decisions.Entities:
Keywords: Anticoagulants; Data Visualization; Health Policy; Pharmacovigilance; Risk Assessment
Year: 2022 PMID: 35576979 PMCID: PMC9117808 DOI: 10.4258/hir.2022.28.2.112
Source DB: PubMed Journal: Healthc Inform Res ISSN: 2093-3681
Figure 1Mapping from source database to target database generated by the Observational Health Data Sciences Initiative (OHDSI) Rabbit-In-a-Hat tool. CDM: common data model.
Figure 2Example of mapping from local concepts to concepts in the Observational Medical Outcomes Partnership (OMOP) vocabulary. ICD-10: International Classification of Diseases 10th edition, SNOMED-CT: Systematic Nomenclature of Medicine Clinical Terms.
Figure 3Differentiating between source values, source Concept IDs, and standard Concept IDs. OMOP: Observational Medical Outcomes Partnership, ICD-9: International Classification of Diseases 9th edition, ICD-10: International Classification of Diseases 10th edition.
Figure 4Study overview detailing criteria for inclusion and exclusion, exposure, and outcomes.
Quantity and structure of data imported from a tertiary acute care hospital in Singapore from January 2013 to December 2016
| OMOP-CDM table | Source table | |||
|---|---|---|---|---|
|
|
| |||
| Table name | Number of rows of records | Table name | Number of rows of records | Proportion migrated (%) |
| person | 245,561 | t_demographics | 258,038 | 95.2 |
|
| ||||
| condition_occurrence | (primary) 210,830 | t_primary_diagnosis | 222,554 | 94.7 |
| (secondary) 799,169 | t_secondary_diagnosis | 839,265 | 95.2 | |
|
| ||||
| measurement | 14,116,544 | t_lab_result | 15,523,576 | 90.9 |
|
| ||||
| visit_occurrence | 1,041,587 | t_encounter | 1,057,263 | 98.5 |
|
| ||||
| drug_exposure | 4,378,657 | t_eprescription_dispensing[ | 2,147,505 | 84.8 |
| t_inpatient_med_order[ | 3,015,159 | 84.8 | ||
Refers to outpatient pharmacy orders and inpatient discharge prescriptions.
Refers to medications used during inpatient ward stay.
Figure 5Flow diagram showing the number of persons in the final qualifying cohorts from Singapore and South Korea.
Baseline characteristics of the final cohorts from Singapore and South Korea
| Warfarin | Rivaroxaban | Combined | |||||
|---|---|---|---|---|---|---|---|
|
|
|
| |||||
| Singapore | South Korea | Singapore | South Korea | Singapore | South Korea | ||
| Number of patients | 269 (73.9) | 1,345 (65.5) | 95 (26.1) | 710 (34.5) | 364 (100) | 2,055 (100) | |
|
| |||||||
| Age (yr) | 70 (15) | 63 (17) | 71 (15) | 69 (14) | 72 (15) | 66 (17) | <0.001 |
|
| |||||||
| Sex | <0.001 | ||||||
| Male | 142 (52.7) | 854 (63.5) | 44 (46.3) | 398 (56.1) | 186 (51.1) | 1,252 (60.9) | |
| Female | 127 (47.2) | 491 (36.5) | 51 (53.7) | 312 (43.9) | 178 (48.9) | 803 (39.1) | |
|
| |||||||
| Race | <0.001 | ||||||
| Korean | NA | 1,345 (100) | NA | 710 (100) | NA | 2,055 (100) | |
| Chinese | 163 (60.6) | NA | 66 (69.5) | NA | 229 (62.9) | NA | |
| Malay | 66 (24.5) | NA | 20 (21.1) | NA | 86 (23.6) | NA | |
| Indian | 20 (7.4) | NA | 5 (5.3) | NA | 25 (6.9) | NA | |
| Others | 20 (7.4) | NA | 4 (4.2) | NA | 24 (6.6) | NA | |
|
| |||||||
| Event outcome[ | <0.001 | ||||||
| Bleeding | 81 (30.1) | 166 (12.3) | 8 (8.4) | 47 (6.6) | 89 (24.5) | 213 (10.4) | |
| Thromboembolic | 32 (11.9) | 219 (16.3) | 15 (15.8) | 64 (9.0) | 47 (12.9) | 283 (13.8) | |
| Neither | 156 (58.0) | 960 (71.4) | 72 (75.8) | 599 (84.4) | 228 (62.6) | 1,559 (75.9) | |
|
| |||||||
| Concurrent medications (within 7 days before occurrence of bleeding) | NA | ||||||
| Aspirin | 7 (2.6) | 66 (4.9) | 1 (1.1) | 2 (0.3) | 8 (2.2) | 68 (3.3) | |
| Other NSAIDs[ | 1 (0.4) | 7 (0.5) | 2 (2.1) | 1 (0.1) | 3 (0.8) | 8 (0.4) | |
| Clopidogrel | 1 (0.4) | 15 (1.1) | 1 (1.1) | 2 (0.3) | 2 (0.5) | 17 (0.8) | |
| Other antiplatelets[ | 0 (0) | 1 (0.1) | 0 (0) | 0 (0) | 0 (0) | 1 (0) | |
Values are presented as number (%); for age, the median (interquartile range) are used to indicate the value.
Assignment of patients to drug groupings is based on the latest drug taken by the patient, except in one patient who was on warfarin but who took apixaban for 2 days, and another who was on warfarin but took rivaroxaban for 1 day.
Based on the earlier event if patient had records of both bleeding and thromboembolic events.
Other non-steroidal anti-inflammatory drugs (NSAIDs) included for analysis were celecoxib, diclofenac, etoricoxib, ibuprofen, indomethacin, ketoprofen, mefenamic acid, meloxicam, naproxen, and piroxicam.
Other antiplatelet drugs included for analysis were dipyridamole, eptifibatide, prasugrel, ticagrelor, and ticlopidine.
Comparing Singapore and South Korea population (using Kruskal-Wallis test for difference in age and Pearson chi-squared test for differences in gender, race, event outcome).
Clinical characteristics of the final cohorts from Singapore and South Korea
| Concept ID | Warfarin | Rivaroxaban | |||
|---|---|---|---|---|---|
|
|
| ||||
| Singapore | South Korea | Singapore | South Korea | ||
| Number of patients | 269 (76.5) | 1,345 (65.5) | 95 (19.7) | 710 (34.5) | |
|
| |||||
| Number of diagnoses | 310[ | 1,827 | 105[ | 961 | |
|
| |||||
| Diagnosis (%) | |||||
| Atrial flutter | 314665 | 1 (0.4) | 0 (0) | 0 (0) | 0 (0) |
| Atrial fibrillation | 313217 | 33 (12.3) | 0 (0) | 4 (4.2) | 0 (0) |
| Atrial arrhythmia[ | 4068155 | 251 (93.3) | 881 (65.5) | 92 (96.8) | 336 (47.3) |
| Atrial fibrillation and flutter | 4108832 | 13 (4.8) | 0 (0) | 2 (2.1) | 0 (0) |
| Atypical atrial flutter | 36712986 | 0 (0) | 3 (0.2) | 0 (0) | 0 (0) |
| Chronic atrial fibrillation | 4141360 | 0 (0) | 71 (5.3) | 0 (0) | 111 (15.6) |
| Paroxysmal atrial fibrillation | 4154290 | 0 (0) | 772 (57.4) | 0 (0) | 438 (61.7) |
| Persistent atrial fibrillation | 4232697 | 0 (0) | 68 (5.1) | 0 (0) | 60 (8.5) |
| Sick sinus syndrome | 4261842 | 12 (4.5) | 30 (2.2) | 6 (6.3) | 15 (2.1) |
| Sinus node dysfunction | 317302 | 0 (0) | 0 (0) | 1 (1.1) | 0 (0) |
| Typical atrial flutter | 36714994 | 0 (0) | 2 (0.1) | 0 (0) | 1 (0.1) |
|
| |||||
| Duration (day) | |||||
| Anticoagulant used before occurrence of bleed | 336 ± 296 | 1,501 ± 1,700 | 295 ± 305 | 492 ± 534 | |
| Anticoagulant used before occurrence of thromboembolic event | 369 ± 270 | 1,654 ± 1,527 | 243 ± 238 | 470 ± 436 | |
Values are presented as number (%) or mean ± standard deviation.
28 of the 269 patients were co-diagnosed with “atrial arrhythmia” (Concept ID: 4068155) in combination with “atrial fibrillation” (313217) and/or “atrial fibrillation and flutter” (4108832), while nine were co-diagnosed with “atrial arrhythmia” (4068155) and “sick sinus syndrome” (4261842) based on EMR, which is a descendant Concept ID based on OMOP. One patient was diagnosed with “atrial fibrillation” (313217) and “atrial fibrillation and flutter” (4108832) while one patient was diagnosed with “atrial arrhythmia” (4068155), “atrial fibrillation and flutter” (4108832), and “sick sinus syndrome” (4261842).
Six of the 95 patients tagged with “atrial arrhythmia” (4068155) were diagnosed with “sick sinus syndrome” (4261842) based on EMR, which is a descendant Concept ID based on OMOP. Three patients were co-diagnosed with “atrial arrhythmia” (4068155) in combination with “atrial fibrillation” (313217) and/or “atrial fibrillation and flutter” (4108832). One patient was diagnosed with “atrial fibrillation” (313217) and “sinus node dysfunction” (317302).
Figure 6Total cohort follow-up analysis: (A) and (B) are 100%, horizontally-stacked, utilization-adjusted bar charts of effectiveness and safety. The vertical height of each bar is proportional to the number of patients in the Singaporean and South Korean cohorts for 4 years of follow-up. Landmark analysis at 3 months: (C) and (D) are 100%, horizontally-stacked, utilization-adjusted bar charts of effectiveness and safety limited to a follow-up period of three months. The vertical height of each bar is proportional to the number of patients in the Singaporean and South Korean cohorts for 3 months of follow-up. The number of patients experiencing the events of interest are represented as proportions within each bar. Event proportions are unadjusted for confounding factors. Drug A: rivaroxaban, Drug B: warfarin.