Literature DB >> 35576273

Super-resolution Imaging of Plasmonic Near-Fields: Overcoming Emitter Mislocalizations.

Yuting Miao1, Robert C Boutelle2, Anastasia Blake3, Vigneshwaran Chandrasekaran3, Chris J Sheehan3, Jennifer Hollingsworth3, Daniel Neuhauser1, Shimon Weiss1,4,5,6.   

Abstract

Plasmonic nano-objects have shown great potential in enhancing applications like biological/chemical sensing, light harvesting and energy transfer, and optical/quantum computing. Therefore, an extensive effort has been vested in optimizing plasmonic systems and exploiting their field enhancement properties. Super-resolution imaging with quantum dots (QDs) is a promising method to probe plasmonic near-fields but is hindered by the distortion of the QD radiation pattern. Here, we investigate the interaction between QDs and "L-shaped" gold nanoantennas and demonstrate both theoretically and experimentally that this strong interaction can induce polarization-dependent modifications to the apparent QD emission intensity, polarization, and localization. Based on FDTD simulations and polarization-modulated single-molecule microscopy, we show that the displacement of the emitter's localization is due to the position-dependent interference between the emitter and the induced dipole, and can be up to 100 nm. Our results help pave a pathway for higher precision plasmonic near-field mapping and its underlying applications.

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Year:  2022        PMID: 35576273      PMCID: PMC9150090          DOI: 10.1021/acs.jpclett.1c04123

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.888


With the development of plasmonics-based devices, there is a growing need for detecting and characterizing plasmonic effects in extended nanosystems. Due to their ability to concentrate light to a small dimension and create enormous local-field enhancement, nanoscale plasmonic devices have provided novel ways of controlling light and have shown great potential in broad applications, including enhanced chemical sensing,[1,2] biosensing,[3−5] and high-resolution bioimaging.[6,7] In addition, integrated nanophotonic circuits combining plasmonic and optical effects have shown great promise in manipulating optical information.[8−10] Thus, to better control and utilize plasmonic near-field effects, a thorough understanding of the relationship between plasmonic structures and their local fields is crucial for optimizing these devices’ performance. Compared to imaging methods like near-field scanning optical microscopy (NSOM)[11−13] or electron energy loss spectroscopy,[14,15] super-resolution imaging has become more popular due to its ability to break the diffraction limit, operate under ambient conditions, and provide high-throughput imaging workflow.[16−18] Recent studies have applied super-resolution fluorescent imaging with single emitters (e.g., dyes or quantum dots (QDs)) to probe plasmonic systems. In these studies, emitted fluorescence intensity from the emitter is used as a far-field reporter of the plasmonic near-field intensity.[19−22] However, due to the strong electromagnetic interaction between emitters and nearby plasmonic nanostructures, this technique is hindered by a complex mechanism. One major factor is the formation of a distorted point spread function (PSF).[23,24] Since an accurate super-resolution localization relies heavily on a stable, well-characterized PSF, this distortion introduces error in the field intensity mapping.[25−27] It has been demonstrated that when emission of the probe molecule is coupled to plasmonic antennas, the fitted centroid position can be away from its actual emitter location (e.g., nanorods,[28] nanowires,[29−31] and Yagi-Uda antennas[32]). This “mislocalization” phenomenon may be originated from (1) superposition of the molecule emission and scattered radiation from the plasmonic interface, (2) molecule emission interference with the induced image dipole, and (3) near-field coupling of the molecule to the antenna.[24,26,30,33] These plasmon-induced interactions may redirect the single-molecule fluorescence polarization (mispolarization) as well.[28,34−36] Moreover, because of effects like fluorescence enhancement and quenching, the intensity of fluorescence can vary nonmonotonically with the field intensity, especially when the emitter is too close (<30 nm) to the nanoantenna.[19] Despite intense interest and research activity, the interaction between nanoantennas and nearby molecules as well as its influence on emitters’ mislocalization and mispolarization, have not been completely understood. In this work, we select quantum dots (QDs) as probes due to their degenerate excitation and emission dipole moments. We match QD emission wavelength to be either on or off the plasmon resonance mode. We show theoretically and experimentally that this strong interaction can induce polarization-dependent changes to both apparent emission intensity and position. We extend previous studies using plasmonic nanoantennas with more complicated structural features. We demonstrate that shifts in the apparent emission localization and polarization are affected by a combination of factors under different conditions (e.g., emitter dipole location and orientation). Moreover, after optical measurements, we add a “postmortem” scanning electron microscope (SEM) step to unveil the real position of QDs near plasmonic structures. We find out that the mislocalization can be up to ∼100 nm and mispolarization can be up to ∼30°. We successfully isolate the effects from nanoantenna’s two orthogonal structural features and elucidate the mechanisms behind emission localization and polarization modification. Our work can provide a cost-effective, high-accuracy solution for better super-resolved mapping of plasmonics’ near-fields. It opens doors for optimized and controlled plasmonic devices with a great potential in a wide area of applications. Tunable Nanoantenna Sample Design. Previously published works developed models on specific “one-dimensional” structures like nanowires and nanorods and used simulation results to correct the mislocalization in the experiment. To gain a better understanding on how near-field coupling and far-field interference would affect QD mislocalization and miapolarization in a more complex (two dimensional, 2D) model system, we perform extensive finite domain time difference (FDTD) calculations to determine the ideal antenna structure for our study (Figure a). With the help of these calculations, we converge to a 2D antenna design with features that have not been carefully studied yet--an L-shaped gold nanostructure with a symmetry axis and a sharp corner. The emitter at the inner corner of the L-shape can have simultaneous interactions with two arms. In this way, the coupling strength can be tuned by controlling the relative distance of the QDs to each arm. Since the scattering from the antenna interface is one significant contribution to the QD image distortion, the relationship between the L-shape dimensions and their optical response is explored. FDTD calculation shows that L-shaped nanoantennas with various dimensions exhibit different scattering spectra (Figure c), and QDs with varying emission wavelengths can be selected to be on- or off-resonance with the plasmon resonance mode. For example, the structure with a configuration of a 60 nm height, 250 nm arm length, and 100 nm arm width has a much stronger scattering at 800 than 600 nm (pink spectrum in Figure c) while vice versa for the (H 60 nm, L 200 nm, W 50 nm) configuration (red spectrum in Figure c). Thus, by tuning the L-shape dimensions and choosing different QDs to match/mismatch the plasmon resonance, we can explore the scattering effect on the QD localization accuracy. As for the experiment (Figure b), two structure configurations are fabricated and optical measurements are carried out. QDs (800 nm emission) are deposited and excited at a wavelength off the plasmon resonance (642 nm) to excite the emitter only and limit the antenna background. In this way, we avoid fluorescence absorption enhancement and isolate the effect in QD emission for polarization-modulated studies. Experimental details and results will be discussed below.
Figure 1

Dimensions of the L-shaped gold nanoantenna and scattering cross sections. (a) Design for FDTD simulations with an L-shaped gold nanoantenna and a dipole source positioned nearby. (b) SEM image of the fabricated nanoantenna and QD. QD’s real location measured from SEM can be fed back to the simulation as an input. (c) Calculated scattering cross sections of L-shaped Au nanostructures with different dimensions (x and y are labeled in (b)). For nanoantennas with different x- and y-dimensions, 600 or 800 nm emission can be scattered weakly or strongly or vice versa by the designed structure.

Dimensions of the L-shaped gold nanoantenna and scattering cross sections. (a) Design for FDTD simulations with an L-shaped gold nanoantenna and a dipole source positioned nearby. (b) SEM image of the fabricated nanoantenna and QD. QD’s real location measured from SEM can be fed back to the simulation as an input. (c) Calculated scattering cross sections of L-shaped Au nanostructures with different dimensions (x and y are labeled in (b)). For nanoantennas with different x- and y-dimensions, 600 or 800 nm emission can be scattered weakly or strongly or vice versa by the designed structure. To construct a system with plasmonic structures with different dimensions and single-molecule QDs close to them, we employ a two-step lithography method (Figure ). The first step defines the L-shaped plasmonic structure, and the second step sets the QD deposition boundaries. More specifically, nanoantennas with varying dimensions are first patterned onto an indium tin oxide (ITO)-coated glass coverslip with electron beam (e-beam) lithography. This conductive and transparent substrate prepares the sample for both optical and SEM measurements. The second lithographic step defines a pattern that prevents QDs from accessing other areas of the coverslip surface, allowing QDs to deposit only near the inner corner of the antenna. Then, a drop of a nanomolar QD solution is placed onto the coverslip to produce a sparse distribution of the probes. QDs can move around the whole substrate surface through Brownian motions, and those that reach the predefined area can attach to the surface through chemical functionalization. The carboxylic acid functional group in a QD ligand can interact with the ITO surface through a combination of weak electrostatic interactions, hydrogen bonding, and covalent bonding between the carboxylate and the indium defect sites.[37] By tuning the QD concentration and the area during the second lithographic step, we ensure that an individual unit only has a single plasmonic nanoantenna and a single QD nearby. This single QD and antenna pair is further verified by the SEM image (Figure b). The difference between the dimensions of the fabricated and simulated structures is negligible. However, this sample fabrication method requires precise alignment between two e-beam lithographic steps, making the success rate/yield of fabrication low. Another approach that implements the dip-pen nanolithography (DPN) method[38] is also tested (Figure S1). In this approach, DPN replaces the second lithographic step and directly “writes” single QDs next to nanoantennas. More details about DPN is discussed in SI. Compared to point accumulation for imaging in nanoscale topography (PAINT) methods that have been used for previous research, which relies on the absorption and release of freely diffusing probes at random locations on the sample surface,[28] our method immobilizes QDs to sites close to the antenna with selective binding and can be only removed though specific washing steps. Instead of counting on the probe to stay in the field of view (FOV) long enough to emit enough photons (especially at low excitation power), we can keep QDs stationary with a well-defined dipole moment orientation throughout the whole acquisition for better PSF fitting and localization with high precision at multiple imaging conditions (e.g., excitation and emission polarization). The interantenna spacing is designed to be 5 μm to avoid interactions between plasmonic nanoantennas while keeping a reasonable measurement throughput. For each wide-field imaging run, images from up to 25 pairs of single antennas and QDs can be collected. To ensure that emitters at different locations of the FOV share the same excitation intensity and polarization, the optical setup is first calibrated with free QDs at different polarizations. More details about the sample fabrication are provided in the Methods.
Figure 2

Two-step e-beam lithography sample fabrication procedures. (a) For the first e-beam lithography step, L-shapes with different dimensions are patterned. (b) Pattern of the second lithography layer is aligned to the first layer and is composed of squares that are accessible to QDs. After the exposed photoresist is removed, the ITO coverslip was soaked in the diluted QD solution. The carboxyl group in QD ligands can then bind to ITO and stay static on the coverslip surface. (c) Photoresist lift-off step washes the unexposed photoresist off the coverslip, taking away QDs that are not bound to the ITO surface. After rinsing and drying, the sample is ready for optical measurements.

Two-step e-beam lithography sample fabrication procedures. (a) For the first e-beam lithography step, L-shapes with different dimensions are patterned. (b) Pattern of the second lithography layer is aligned to the first layer and is composed of squares that are accessible to QDs. After the exposed photoresist is removed, the ITO coverslip was soaked in the diluted QD solution. The carboxyl group in QD ligands can then bind to ITO and stay static on the coverslip surface. (c) Photoresist lift-off step washes the unexposed photoresist off the coverslip, taking away QDs that are not bound to the ITO surface. After rinsing and drying, the sample is ready for optical measurements. Polarization-Resolved Single-Molecule Localization-Based Microscopy. This section describes the experimental approach that controls and studies the interaction between the single-molecule emitter and the plasmonic antenna with super-resolution. We focus on three strategies to modulate and analyze the coupling between the fluorescent emitter and plasmonic nanoantenna: (i) modulate the polarization of the wide-field excitation laser; (ii) analyze the polarization of the QD emission pattern in the far-field; (iii) tune the QD emission spectrum to be on- or off-plasmon resonance. As shown in Figure S2a, the modulation approach (i) is achieved by adding a polarizer in the excitation pathway and (ii) by adding an analyzer in the emission pathway of the wide-field fluorescence microscopy. Both the polarizer and analyzer are mounted on rotating stages (Figure S2b). As the polarizer/analyzer rotates, the far-field images of QDs are acquired at different excitation/emission polarization combinations. The excitation is filtered out, and the emission fluorescence is collected. No noticeable sample drift was observed during the measurement duration. For a QD without plasmonic structures nearby, the fluorescence emission increases linearly with the excitation up to around half of the saturation intensity.[22] However, depending on the spectral overlap of the QD emission and plasmon resonance, the intensity of fluorescence emitted from the QD–plasmon system is no longer linear with the excitation. Instead, it is strongly affected by whether the QD emission is on- or off-resonance with the plasmon resonance mode.[39] More specifically, previous research has shown that, based on the emitter’s location and emission spectra, the coupling strength between the emitter and the antenna fluctuates, causing shifts in the fitted location of the emitter.[39] As for the modulation approach (iii), we start with CdSe/ZnS QDs with an emission peak at around 800 nm. The results shown in the rest of this manuscript are generated based on this experimental setting. QDs with an off-resonance emission or dual emissions like Mn+-doped CdS QDs, which have simultaneous on- and off-resonance emissions, can be used to further investigate the effect of spectral overlap on the coupling and the shift in emitter localization. For the polarization modulation experiment, we adopt a two-step measurement: (1) a measurement without the polarizer and analyzer to index the apparent location of QDs together with extraction of the local near-field intensity, followed by (2) measurements with a modulated linearly polarized light at several different excitation/emission polarization angles. The imaging system with excitation only, emission only, and both polarization modulations together are first calibrated and characterized with sparsely spin-coated QDs. Measurements are carried out on each individual unit composed of one antenna and one QD. The polarizer and the analyzer rotate separately from 0 to 360° with 45° intervals, generating 81 polarization combinations in total. For each combination, a wide-field fluorescence image is captured (Figure ). Afterward, the centroid position of each diffraction spot is determined. There are multiple methods for extracting the centroid position of the probe. One recently introduced is using a basis of Hermite–Gaussian functions as a PSF model to fit abnormal, multilobed PSFs generated from a system with dye labels close to plasmonic nanowires.[29] Here, the multilobed PSF is not observed in our QD–antenna system. Instead, we start with a typical 2D Gaussian function to fit the far-field image and apply the maximum likelihood estimation method (MLEM) to optimize this PSF to give us the best fit, returning an estimation of the QD’s apparent position.[40] Even though the degree of final localization precision is heavily dependent upon the number of photons collected and the fluorescence background level, this fitting method has shown overall good performance for localizing QDs (or other emitting probes) in free space for both simulation and experimental results.
Figure 3

QD images at different emission polarizations. (a) Bright-field image of nanostructure + QD. Since the size of the structure is below the diffraction limit, only the scattering light can be imaged without details of the structure. (b) Fluorescence image of QDs close to plasmonic structures. The differencein the QD brightness may come from a different coupling strength between the QD and the structure. Scale bar: 1 μm. (c) Images of a single-molecule QD with different analyzer polarizations and displacements in another field of view. Since QDs have degenerate excitation dipole moments, changing the excitation polarization on “free” QDs would not affect the image. With the changing emission polarization, the center of the QD images shifts. The analyzer polarization is labeled at the top of each fluorescence image, along with the displacement (nm unit) of the fitted center compared to the sum image.

QD images at different emission polarizations. (a) Bright-field image of nanostructure + QD. Since the size of the structure is below the diffraction limit, only the scattering light can be imaged without details of the structure. (b) Fluorescence image of QDs close to plasmonic structures. The differencein the QD brightness may come from a different coupling strength between the QD and the structure. Scale bar: 1 μm. (c) Images of a single-molecule QD with different analyzer polarizations and displacements in another field of view. Since QDs have degenerate excitation dipole moments, changing the excitation polarization on “free” QDs would not affect the image. With the changing emission polarization, the center of the QD images shifts. The analyzer polarization is labeled at the top of each fluorescence image, along with the displacement (nm unit) of the fitted center compared to the sum image. When the emission is coupled into a plasmonic antenna, it is redirected and reradiated into the far-field compared to the radiation from the emitter alone. Due to the strong electromagnetic coupling of the emitter to the nearby plasmonic structure, the far-field radiation pattern of the emitter will be distorted, introducing imprecision to the localization of single emitters during this fitting step. The final QD far-field images are affected by a combination of interactions, like scattering from the nanostructure surface, dielectric distortion of the emission, and Young’s interference effect between the emitter and the image dipole.[30,31] Thus, modulation and characterization of electromagnetic coupling strength between QDs and nearby metallic structures is crucial to understand and counteract mislocalization of QDs. Mislocalization of QDs Close to Plasmonic Structures. The fitted QD centers at different polarization combinations are compared to the center determined by the sum image of all polarization combinations. The spatial displacement is calculated as the difference between the two centers. The rotation of the polarizer in the excitation path does not show the impact on the emitter displacement, since QDs have degenerate excitation dipoles. This result verifies the result discussed in ref (29) that the excitation polarization does not affect the PSF distortion. However, as the analyzer rotates, we observe clear shifts in apparent QD center positions (mislocalizations) at different emission polarizations in both simulation and experiments. As shown in Figure b, experimental displacement of the emitter in x (parallel) and y (perpendicular to the bottom arm of the L-shape) directions are plotted over one full circle of the analyzer rotation. To compensate for the discrepancy of photoblinking behaviors captured at different polarizations and its effect on the imaged fluorescence intensity, the final plot is the average over four full circles of the polarizer rotation. Photobleaching of QDs is negligible. For cases where photobleaching is observed, the measurement sets are removed from the analysis pipeline. As expected, the shift of the emitter center positions in both x- and y-directions is periodic and repeats every 180° of the analyzer rotation (Figure ). As the analyzer rotates, the shifts in the x- and y-axes vary and can be larger than 100 nm. After the optical measurement, the distance between the inner corner of the L-shaped nanoantenna and the QD is measured using SEM with the help of indexing markers patterned during the sample fabrication. This distance is regarded as the ground truth for the emitter’s location and can be further used as the position of the dipole source for the simulations (Figure a). Since the sample fabrication method requires precise alignment between two e-beam lithographic steps and the SEM step has a reasonably low success rate, we were able to yield one successful iteration that captures the QD position in both optical measurement and SEM (Figure ).
Figure 4

Pattern matching to determine the emitter’s position. Simulated (a) and experimentally measured (b) displacement are matched, and the difference in the center location is the value of mislocalization. The change of mislocalization shares the same pattern as the simulation result. The experimental emitter position (81 nm, 28 nm) is calculated by fitting the sum image of images captured at all polarizer and the analyzer polarizations. The emitter position input for the simulation (107 nm, 37 nm) is from the SEM image of the same nanoantenna/QD system. The position difference shows the mislocalization in fluorescence measurement, while the matching pattern between the simulation and experiment plots shows the feasibility of using simulation to study the complex interaction between the nanoantenna and QD. Based on the magnitude and direction of the displacement, the plots from the experiment can be compared with plots in the simulation collection, and patterns are matched using a least-squares model fit.

Pattern matching to determine the emitter’s position. Simulated (a) and experimentally measured (b) displacement are matched, and the difference in the center location is the value of mislocalization. The change of mislocalization shares the same pattern as the simulation result. The experimental emitter position (81 nm, 28 nm) is calculated by fitting the sum image of images captured at all polarizer and the analyzer polarizations. The emitter position input for the simulation (107 nm, 37 nm) is from the SEM image of the same nanoantenna/QD system. The position difference shows the mislocalization in fluorescence measurement, while the matching pattern between the simulation and experiment plots shows the feasibility of using simulation to study the complex interaction between the nanoantenna and QD. Based on the magnitude and direction of the displacement, the plots from the experiment can be compared with plots in the simulation collection, and patterns are matched using a least-squares model fit. Next, a large set of FDTD simulations was performed to generate far-field images with different conditions for both on- and off-resonance emitters close to metallic systems. Based on the mislocalization trend as the emitter moves away from the inner corner of the antenna (Figure a,b), a simple qualitative model can be adopted to understand the interaction between the emitter and the plasmonic antenna. In addition, this model can also be used to determine how the interaction strength can influence the level of mislocalization for emitters at different locations. For an L-shaped nanoantenna and QDs with on-resonance emission, the displacements are determined by superposition of dipole signals. Specifically, the system can be modeled as one quantum dot, which can be considered as a single dipole, interacting with two induced dipoles, each from one arm of the L-shaped metallic structure. The observed far-field image is formed by the superposition and interference of radiation from the three dipoles in total. The left arm mainly changes the displacement in the x-direction, while the bottom arm changes the displacement in the y-direction. Compared to other one-dimensional structures studied in previous works, one significant difference for this system is that the emitter is coupled at two directions simultaneously with different coupling strengths. When the emitter is located on the symmetry axis of the L-shape, the interactions with the two arms are identical, and the displacements in the x- and y-directions are similar (Figure c). As the emitter moves asymmetrically away from one arm (for example, the left arm), the displacement range in the x-direction would first increase and then decrease. For the specific position shown in Figure c, when the emitter is away from the left arm (125 nm), its interaction with the left dipole is minimal so that its displacement in the x-direction is less than 20 nm. At the same time, its emission is still coupled to the bottom arm, making the maximum displacement in the y-direction to be almost 90 nm. Meanwhile, the oscillation of displacement as the emitter moves away from one arm shows that besides the superposition of radiation from multiple dipoles, interference between them also plays an essential role in determining the final displacement. Depending on the relative phases between three dipoles, a constructive/destructive interference may move the fitted center closer to/further away from the interface.[30] For instance, if the dipole (QD) is orientated parallel to the bottom arm, it interferes constructively with the induced dipole from the left arm and destructively with the one from the bottom arm. Thus, the mislocalization in the x-direction (0° emission polarization angle) fluctuates but stays negative for the measured distance range (Figure ), which shares similar patterns as in ref (30). Depending on how the QD is located and oriented in relation to the arm orientation, constructive or destructive interference may prevail.
Figure 5

Calculated displacement for emitters at different distances to the L-shaped nanoantennna. (a) Cartoon demonstrating emitters at different locations that interact with two induced dipoles, each from one arm of the L-shape. The displacement in the x-direction for QDs positioned 25, 75, and 125 nm away from the left arm is plotted in (b). The colors of emitters correspond to plot colors. (c) Simulated mislocalizations of single-molecule QDs positioned at the inner corner with different distances to the L-shape. As the analyzer rotates from 0 to 360°, the shifts in the x- and y-axes vary and can be as large as 100 nm. The displacement is caused mainly by the superposition of the radiations from one original dipole plus two induced dipoles as well as the interference between them. The emitter at 75 nm has the most notable fluctuation and the greatest absolute displacement. When the emitter is too close (25 nm), besides superposition, destructive interference reduces the displacement in the x-direction. When it is far away from the interface, the displacement decays.

Calculated displacement for emitters at different distances to the L-shaped nanoantennna. (a) Cartoon demonstrating emitters at different locations that interact with two induced dipoles, each from one arm of the L-shape. The displacement in the x-direction for QDs positioned 25, 75, and 125 nm away from the left arm is plotted in (b). The colors of emitters correspond to plot colors. (c) Simulated mislocalizations of single-molecule QDs positioned at the inner corner with different distances to the L-shape. As the analyzer rotates from 0 to 360°, the shifts in the x- and y-axes vary and can be as large as 100 nm. The displacement is caused mainly by the superposition of the radiations from one original dipole plus two induced dipoles as well as the interference between them. The emitter at 75 nm has the most notable fluctuation and the greatest absolute displacement. When the emitter is too close (25 nm), besides superposition, destructive interference reduces the displacement in the x-direction. When it is far away from the interface, the displacement decays. Ideally, if the simulation and experimental settings are matched, the magnitude of the polarization-dependent PSF distortion and emitter displacement can be mapped out around the plasmonic nanoantenna. This mapping can be utilized to help deduce the actual emitter position from the distorted PSF by measuring the relative shifts. Meanwhile, the experimental results can be further fed back to simulations in order to improve the predictive power. With this mapping, the SEM step can be finally abandoned, and the real emitter position can be obtained purely from matching the experimental and simulation displacement plots. However, the sample preparation method requires high alignment precision between two lithographic steps and has proven to be challenging with respect to (1) nanostructures being fabricated with designed dimensions, (2) QDs being positioned close to nanostructures, (3) QDs staying fluorescent during the whole optical measurement, and (4) real locations of QDs being accessible using SEM. Currently, the “post mortem” step with SEM to find the real position of the emitter has a reasonably low success rate, and we were able to yield only one successful iteration that “closes the loop” (Figure b). Alternatively, we generate a library of simulated images and plots and match the displacement pattern from the experiment to the simulation result using a least-squares model fit. The dipole source position input from the simulation is then used as the “real” position of the emitter when we see the change of displacement share the same pattern. An alternative method for sample preparation using DPN is presented in the SI. Detection of Plasmon-Induced Emission Polarization Rotation. In addition to the substantial modification that the QD–antenna interaction has on the apparent QD localization, we found that this interaction also strongly influences the polarization of the emitted light from this system (mispolarization). Previous studies have reported that the fluorescence emission rate and polarization can be redirected depending on the design of the antenna (e.g., Yagi-Uda antenna or nanorod).[28,32] The discussion below focuses on a more complex antenna shape, an L-shape, and explores the change in polarization resulted from the plasmon-coupled emission. By measuring the emission polarization of a single-molecule QD coupled to an individual plasmonic nanoantenna, we reveal that QD’s emission polarization can be significantly rotated depending on the emitter’s position. Far-filed images for QDs with different dipole orientations and emission wavelengths at various positions next to the antenna (H 60 nm, L 200 nm, W 50 nm) are calculated using the same simulation settings as described in previous sections. To quantify the rotation of the emission polarization, we define the apparent emission polarization (θapp) of each emitter by comparing the total intensity of images collected at two perpendicular directionswhere I⇆ and I↑↓ are intensities collected at directions parallel and perpendicular to the bottom arm of the L-shape, respectively. The bottom arm and left arm are aligned to the x-axis and y-axis of a Cartesian coordinate system, respectively. Intensities are always positive, and the arctangent function maps the apparent emission polarization into the first quadrant (0 ∼ 90°). The 2D projection of the emission polarization at the image plane can be collected with a polarization-resolved optical setup shown in the previous section. Theoretically, a free single-molecule QD at the image plane can be considered as a dipole source, whose emission polarization is determined solely by its dipole orientation. However, when interacting with the plasmonic antenna nearby, a combination of near-field coupling, superposition, and interference with the nanoantenna far-field emission would introduce mislocalization and mispolarization, which hinders us from abstracting the actual plasmonic near-field intensity.[24−27,30,31] Moreover, when a high numerical-aperture (NA) objective lens is used during image acquisitions, it has been reported that the cross-talk between different polarization channels would deviate the calculated θapp.[28] This issue can be resolved by calibrating the imaging system using a control sample with free QDs randomly positioned on the coverslip for simulations or experiments. In this way, the relationship between the expected and the calculated θapp can be mapped and used to correct the measurements. Since the L-shaped metallic structure can be considered as two nanorods that are symmetrically connected, the rotation of the apparent polarization angle is dependent on the position and orientation of the emitter with respect to the symmetry axis. Table shows a compilation of the calculated mispolarization of 800 nm emission QDs under different conditions. The large rotation for 0- and 90°-oriented dipoles is mainly contributed by the superposition of the induced localized surface plasmon (LSP) modes. Radiation from the bottom arm increases I⇆, while radiation from the left arm increases I↑↓. If the scattered radiation intensities from two arms are equal, the detected apparent emission polarization is expected to be 45°. For instance, for emitters positioned on the symmetry axis (e.g., (25 nm, 25 nm)) away from the inner corner of the L-shape, the interaction between the emitter and the two arms is equal. Therefore, both 0- and 90°-oriented dipoles are rotated toward 45°, while the orientation of the 45°-oriented dipoles is unchanged (Table and Figure a). The degrees of rotation for 0 and 90° orientations are symmetrical as expected. As the emitter moves away from both arms along the symmetry axis (e.g., (75 nm, 75 nm)), the induced radiation from both arms decreases, causing less rotation of the detected θapp toward 45°. When the emitter is off the symmetry axis, depending on its distance to two arms, all three dipole orientations are “mispolarized”. When the QD moves away from the left arm (e.g., (75, 25 nm) and (125, 25 nm) in Figure ), the interaction between them decreases (Table ). A higher I⇆ of the image (a smaller θapp) is due to more dominant emission from the bottom arm. In this regard, θapp rotates more toward 0° for both 0 and 90° dipole orientations. Conversely, for QDs further away from the bottom arm, θapp is closer to 90° because of the superposition of the induced LSP emission at the left arm and the original QD emission.
Table 1

Calculated Apparent Emission Polarization (deg) for Different Dipole Orientations

dipole orientation (deg)dipole position relative to L-shape center (nm)
free dipole w/p antenna
 (25, 25)(75, 75)(75, 25)(125, 25)(25, 75) 
024.9715.7516.176.2626.095.74
4545.0045.0049.2652.1940.7445.00
9060.7174.2563.9061.5673.8384.26
Figure 6

Plasmon-induced rotation of the QD emission polarization. (a) Calculated spectrum of rotation of the apparent polarization angle for a QD positioned at the inner corner with a distance of (25 nm, 25 nm) to the L-shaped nanoantenna (L 200 nm, W 50 nm). For an emitter positioned on the symmetry axis, since its interactions with the two arms are identical, the apparent polarization is expected to rotate toward the axis direction. (b) Comparison of the θapp (x-polarization) and plasmon resonance spectrum. The apparent polarization angle spectrum shares a similar pattern as the scattering cross section under 800 nm, meaning that the scattering from the interfaces of the two arms plays an essential role in polarization rotation within the visible light spectrum. Within the visible range, the biggest emission polarization rotation toward 45° is observed around the plasmon resonance peak because of the enhanced scattering from the nanoantenna. The difference between two spectra suggests that, besides scattering, mispolarization is attributed to other factors like interference, which needs further investigation.

Plasmon-induced rotation of the QD emission polarization. (a) Calculated spectrum of rotation of the apparent polarization angle for a QD positioned at the inner corner with a distance of (25 nm, 25 nm) to the L-shaped nanoantenna (L 200 nm, W 50 nm). For an emitter positioned on the symmetry axis, since its interactions with the two arms are identical, the apparent polarization is expected to rotate toward the axis direction. (b) Comparison of the θapp (x-polarization) and plasmon resonance spectrum. The apparent polarization angle spectrum shares a similar pattern as the scattering cross section under 800 nm, meaning that the scattering from the interfaces of the two arms plays an essential role in polarization rotation within the visible light spectrum. Within the visible range, the biggest emission polarization rotation toward 45° is observed around the plasmon resonance peak because of the enhanced scattering from the nanoantenna. The difference between two spectra suggests that, besides scattering, mispolarization is attributed to other factors like interference, which needs further investigation. The similarity between the θapp and the antenna scattering spectrum further verifies our hypothesis. In Figure a, the relationships between θapp and the emission wavelength of the emitter positioned at (25, 25 nm) are plotted for three different dipole orientations. As expected, the 0°- and 90°-oriented dipoles are mispolarized toward the symmetry axis, while 45°-oriented keeps unchanged (Figure a). The greatest rotation is achieved at around the plasmon resonance peak, meaning that the on-resonance emission has a stronger scattering from both interfaces, rotating the apparent emission polarization more toward 45°. However, the difference between the spectrum of θapp and scattering efficiency (Figure b), like double peaks and peak center shift, indicates that even though the scattering plays a major role in the mispolarization, there exist other factors that determine the final degree of rotation (e.g., interference between the QD and induced dipole emission). The two spectra diverge after around 800 nm, meaning that the same theoretical explanation might not be applicable for the infrared region. More investigation is needed to characterize other possible mechanisms. In summary, we have demonstrated that the near-field interaction between a plasmonic structure and a nearby emitter is dependent on the emitter’s relative position, emission polarization, and emission wavelength and can induce significant mislocalization and mispolarization during an emitter’s far-field detection and analysis. By isolating effects from the L-shaped nanoantenna’s two arms at two orthogonal polarization directions, our study elucidates the mechanisms underlying modification of far-field emission polarization and localization in a QD–antenna system. Notably, we have confirmed that the strong interaction between the emitter and the nanoscale plasmonic structure can introduce substantial error to emitter localization. The apparent emission polarization can also measure the interaction strength. The emission polarization rotates toward the symmetry axis when the emitter is located on the axis. Depending on which arm emitter is closer to, the emission polarization rotates toward either the left or bottom arm of L-shape. By employing FDTD simulations and a polarization-resolved single-molecule localization-based method, we have revealed that the displacement of the emitter’s localization originates mainly from the interference between the emitter and induced dipole emissions. In contrast, the superposition of the emitter and scattered radiation plays a more critical role in the emission polarization rotation. Even though we focused on a specific example, a similar analysis pipeline can be applied to study a more complex system (e.g., a metallic or dielectric nanoantenna whose shape contains sharp and rounded corners). This topic can be further extended both in theory and application. In theory, an analytical model to quantitatively understand this QD–antenna system can be constructed and used to predict the true plasmonic near-fields. The effect of near-field coupling, far-field superposition, and interference can be implemented into the model and correct for the mislocalization and mispolarization. This model would provide a practical method that benefits many applications that rely on measuring field strengths with high precision, ranging from biology to high-speed integrated circuits to optical quantum computing. As for application, more simulated and polarization-modulated fluorescence images can be collected using other plasmonic structures, which help connect the emitter mislocalization at different emission polarizations to the shape of the plasmonic nanoantenna and the emitter’s distance to it. This information can be fed to a machine learning model (e.g., a convolutional neural network, CNN) to solve the inverse problem of predicting the plasmonic structure based on the far-field images. The L-shape will be one of the base structures for the model, and together with other base structures like nanowires and nanodisks, the whole contour of the structure can be determined by combining base structures.

Methods

FDTD Simulation and QD Image Generation. Finite-difference time-domain (FDTD) simulations were performed using a free and open-source software package called Meep. Two types of simulations are carried out: (a) spectrum of scattering and absorption cross sections of L-shaped nanoantennas using direct plane wave illuminations and (b) electromagnetic near-field mapping of the QD–antenna system and image generation with a far-field projection. For all calculations, we assumed a background refractive index of 1 to mimic the dry sample condition in air. A glass substrate layer with a refraction index equal to 1.52 is positioned below the plasmonic nanoantenna. The dielectric function of gold is obtained from Johnson and Christy.[41] For (b), we consider QDs as dipole sources and simulated the radiation patterns of dipoles oriented perpendicular and parallel with respect to each arm of the L-shape and along the symmetry axis. A full range of QD distances to the L-shape’s inner corner and L-shape with different dimensions are also calculated. The dipole source orientation is assumed to be fixed under experimental conditions. A monitor is set up below the nanoantenna and QD to measure the electric fields of the near-field. The collection angles that fall outside the NA of the objective lens are filtered out. The far-field projection and image generation are then calculated using a chirped-z transformation in MATLAB. The radiation of the isotropic emitter is calculated by adding together the images of the dipole source perpendicular and parallel to the antenna arm. This image can then be fitted with a 2D Gaussian function to determine the emitter’s apparent location and compared with the input location of the simulation. Relevent data and codes for simulations and data analysis are available on figshare (DOI: 10.6084/m9.figshare.19640544). Sample Fabrication. Samples were fabricated on ITO-coated glass coverslips (Nanocs). First, the coverslip is cleaned by a rinse with acetone, isopropanol, and DI water in sequence. A thin film (∼180 nm) of poly(methyl methacrylate) (PMMA) is then spin-coated onto the clean coverslip and baked in preparation for the pattern writing. L-shapes with various dimensions and markers are patterned into the photoresist using electron beam lithography (first layer). The pattern is developed in a MIBK/IPA 1:3 solution, followed by a plasma etching step to create sharp edges and improve metal adhesion to the surface. A layer of gold (60 nm) is then deposited using an electron beam evaporator (CHA) with a wetting layer of titanium (1 nm). After the lift-off step in acetone, gold on areas without electron beam exposure are removed, leaving only L-shaped antennas on the coverslip. A similar sample preparation step is carried for the second layer of electron beam lithography. For this layer, the instrument can automatically align the markers of two layers and pattern a 200 nm square next to each L-shape. After the exposed photoresist was removed, the ITO coverslip was soaked in a diluted QD solution (1 μm of Qdot 800 ITK Carboxyl Quantum Dots solution) for 60 min, followed by the photoresist lift-off, rinsing, and drying. Optical Measurements. The samples were illuminated using a 642 nm laser diode source (Coherent) using an inverted microscope with a 100× oil-immersion objective (NA 1.49, Nikon). The excitation is filtered using a dichroic and an 800 nm long-pass filter. The excitation and emission polarizations are controlled through the polarizer and analyzer, respectively. Both the polarizer and analyzer are mounted on separate rotating stages controlled by Arduino, and QD images at different excitation/emission polarization combinations are recorded. Fluorescence is collected by an electron-multiplying charge-coupled device (EMCCD) camera with an extra set of lenses to increase the magnification further. The sample is mounted onto the sample stage and stablized waited until no apparent drift is observed. In each field of view (FOV), at least 25 QD–antenna units can be measured simultaneously. For each FOV, images are taken over four complete rotations of the polarizer (from 0 to 360° with 45° intervals). Later, the same FOV can be imaged using SEM with the help of patterned markers, and the true location of QDs can be compared with the measured locations.
  29 in total

1.  A comparative analysis of localized and propagating surface plasmon resonance sensors: the binding of concanavalin a to a monosaccharide functionalized self-assembled monolayer.

Authors:  Chanda Ranjit Yonzon; Eunhee Jeoung; Shengli Zou; George C Schatz; Milan Mrksich; Richard P Van Duyne
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

2.  Mapping of surface-enhanced fluorescence on metal nanoparticles using super-resolution photoactivation localization microscopy.

Authors:  Hongzhen Lin; Silvia P Centeno; Liang Su; Bart Kenens; Susana Rocha; Michel Sliwa; Johan Hofkens; Hiroshi Uji-i
Journal:  Chemphyschem       Date:  2011-12-19       Impact factor: 3.102

3.  Optically-programmable nonlinear photonic component for dielectric-loaded plasmonic circuitry.

Authors:  Alexey V Krasavin; Sukanya Randhawa; Jean-Sebastien Bouillard; Jan Renger; Romain Quidant; Anatoly V Zayats
Journal:  Opt Express       Date:  2011-12-05       Impact factor: 3.894

4.  Unidirectional emission of a quantum dot coupled to a nanoantenna.

Authors:  Alberto G Curto; Giorgio Volpe; Tim H Taminiau; Mark P Kreuzer; Romain Quidant; Niek F van Hulst
Journal:  Science       Date:  2010-08-20       Impact factor: 47.728

5.  Circuit elements at optical frequencies: nanoinductors, nanocapacitors, and nanoresistors.

Authors:  Nader Engheta; Alessandro Salandrino; Andrea Alù
Journal:  Phys Rev Lett       Date:  2005-08-23       Impact factor: 9.161

6.  Multicolor super-resolution imaging with photo-switchable fluorescent probes.

Authors:  Mark Bates; Bo Huang; Graham T Dempsey; Xiaowei Zhuang
Journal:  Science       Date:  2007-08-16       Impact factor: 47.728

7.  Spatiotemporal control of femtosecond plasmon using plasmon response functions measured by near-field scanning optical microscopy (NSOM).

Authors:  Shutaro Onishi; Keiichiro Matsuishi; Jun Oi; Takuya Harada; Miyuki Kusaba; Kenichi Hirosawa; Fumihiko Kannari
Journal:  Opt Express       Date:  2013-11-04       Impact factor: 3.894

8.  Super-resolution imaging of interactions between molecules and plasmonic nanostructures.

Authors:  Katherine A Willets
Journal:  Phys Chem Chem Phys       Date:  2013-04-21       Impact factor: 3.676

9.  Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles.

Authors:  R Elghanian; J J Storhoff; R C Mucic; R L Letsinger; C A Mirkin
Journal:  Science       Date:  1997-08-22       Impact factor: 47.728

Review 10.  Plasmonic nanoprobes for SERS biosensing and bioimaging.

Authors:  Tuan Vo-Dinh; Hsin-Neng Wang; Jonathan Scaffidi
Journal:  J Biophotonics       Date:  2010-01       Impact factor: 3.207

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