Yuting Miao1, Robert C Boutelle2, Anastasia Blake3, Vigneshwaran Chandrasekaran3, Chris J Sheehan3, Jennifer Hollingsworth3, Daniel Neuhauser1, Shimon Weiss1,4,5,6. 1. Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States. 2. National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, United States. 3. Los Alamos National Laboratory, Casa Grande Drive, Los Alamos, New Mexico 87544, United States. 4. Department of Physiology, University of California, Los Angeles, California 90095, United States. 5. California NanoSystems Institute, University of California, Los Angeles, California 90095, United States. 6. Department of Physics, Institute for Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel.
Abstract
Plasmonic nano-objects have shown great potential in enhancing applications like biological/chemical sensing, light harvesting and energy transfer, and optical/quantum computing. Therefore, an extensive effort has been vested in optimizing plasmonic systems and exploiting their field enhancement properties. Super-resolution imaging with quantum dots (QDs) is a promising method to probe plasmonic near-fields but is hindered by the distortion of the QD radiation pattern. Here, we investigate the interaction between QDs and "L-shaped" gold nanoantennas and demonstrate both theoretically and experimentally that this strong interaction can induce polarization-dependent modifications to the apparent QD emission intensity, polarization, and localization. Based on FDTD simulations and polarization-modulated single-molecule microscopy, we show that the displacement of the emitter's localization is due to the position-dependent interference between the emitter and the induced dipole, and can be up to 100 nm. Our results help pave a pathway for higher precision plasmonic near-field mapping and its underlying applications.
Plasmonic nano-objects have shown great potential in enhancing applications like biological/chemical sensing, light harvesting and energy transfer, and optical/quantum computing. Therefore, an extensive effort has been vested in optimizing plasmonic systems and exploiting their field enhancement properties. Super-resolution imaging with quantum dots (QDs) is a promising method to probe plasmonic near-fields but is hindered by the distortion of the QD radiation pattern. Here, we investigate the interaction between QDs and "L-shaped" gold nanoantennas and demonstrate both theoretically and experimentally that this strong interaction can induce polarization-dependent modifications to the apparent QD emission intensity, polarization, and localization. Based on FDTD simulations and polarization-modulated single-molecule microscopy, we show that the displacement of the emitter's localization is due to the position-dependent interference between the emitter and the induced dipole, and can be up to 100 nm. Our results help pave a pathway for higher precision plasmonic near-field mapping and its underlying applications.
With the
development of plasmonics-based
devices, there is a growing need for detecting and characterizing
plasmonic effects in extended nanosystems. Due to their ability to
concentrate light to a small dimension and create enormous local-field
enhancement, nanoscale plasmonic devices have provided novel ways
of controlling light and have shown great potential in broad applications,
including enhanced chemical sensing,[1,2] biosensing,[3−5] and high-resolution bioimaging.[6,7] In addition,
integrated nanophotonic circuits combining plasmonic and optical effects
have shown great promise in manipulating optical information.[8−10] Thus, to better control and utilize plasmonic near-field effects,
a thorough understanding of the relationship between plasmonic structures
and their local fields is crucial for optimizing these devices’
performance. Compared to imaging methods like near-field scanning
optical microscopy (NSOM)[11−13] or electron energy loss spectroscopy,[14,15] super-resolution imaging has become more popular due to its ability
to break the diffraction limit, operate under ambient conditions,
and provide high-throughput imaging workflow.[16−18]Recent
studies have applied super-resolution fluorescent imaging
with single emitters (e.g., dyes or quantum dots (QDs)) to probe plasmonic
systems. In these studies, emitted fluorescence intensity from the
emitter is used as a far-field reporter of the plasmonic near-field
intensity.[19−22] However, due to the strong electromagnetic interaction between emitters
and nearby plasmonic nanostructures, this technique is hindered by
a complex mechanism. One major factor is the formation of a distorted
point spread function (PSF).[23,24] Since an accurate super-resolution
localization relies heavily on a stable, well-characterized PSF, this
distortion introduces error in the field intensity mapping.[25−27] It has been demonstrated that when emission of the probe molecule
is coupled to plasmonic antennas, the fitted centroid position can
be away from its actual emitter location (e.g., nanorods,[28] nanowires,[29−31] and Yagi-Uda antennas[32]). This “mislocalization” phenomenon
may be originated from (1) superposition of the molecule emission
and scattered radiation from the plasmonic interface, (2) molecule
emission interference with the induced image dipole, and (3) near-field
coupling of the molecule to the antenna.[24,26,30,33] These plasmon-induced
interactions may redirect the single-molecule fluorescence polarization
(mispolarization) as well.[28,34−36] Moreover, because of effects like fluorescence enhancement and quenching,
the intensity of fluorescence can vary nonmonotonically with the field
intensity, especially when the emitter is too close (<30 nm) to
the nanoantenna.[19]Despite intense
interest and research activity, the interaction
between nanoantennas and nearby molecules as well as its influence
on emitters’ mislocalization and mispolarization, have not
been completely understood. In this work, we select quantum dots (QDs)
as probes due to their degenerate excitation and emission dipole moments.
We match QD emission wavelength to be either on or off the plasmon
resonance mode. We show theoretically and experimentally that this
strong interaction can induce polarization-dependent changes to both
apparent emission intensity and position. We extend previous studies
using plasmonic nanoantennas with more complicated structural features.
We demonstrate that shifts in the apparent emission localization and
polarization are affected by a combination of factors under different
conditions (e.g., emitter dipole location and orientation). Moreover,
after optical measurements, we add a “postmortem” scanning
electron microscope (SEM) step to unveil the real position of QDs
near plasmonic structures. We find out that the mislocalization can
be up to ∼100 nm and mispolarization can be up to ∼30°.
We successfully isolate the effects from nanoantenna’s two
orthogonal structural features and elucidate the mechanisms behind
emission localization and polarization modification. Our work can
provide a cost-effective, high-accuracy solution for better super-resolved
mapping of plasmonics’ near-fields. It opens doors for optimized
and controlled plasmonic devices with a great potential in a wide
area of applications.Tunable Nanoantenna Sample Design. Previously
published works developed models on specific “one-dimensional”
structures like nanowires and nanorods and used simulation results
to correct the mislocalization in the experiment. To gain a better
understanding on how near-field coupling and far-field interference
would affect QD mislocalization and miapolarization in a more complex
(two dimensional, 2D) model system, we perform extensive finite domain
time difference (FDTD) calculations to determine the ideal antenna
structure for our study (Figure a). With the help of these calculations, we converge
to a 2D antenna design with features that have not been carefully
studied yet--an L-shaped gold nanostructure with a symmetry axis and
a sharp corner. The emitter at the inner corner of the L-shape can
have simultaneous interactions with two arms. In this way, the coupling
strength can be tuned by controlling the relative distance of the
QDs to each arm. Since the scattering from the antenna interface is
one significant contribution to the QD image distortion, the relationship
between the L-shape dimensions and their optical response is explored.
FDTD calculation shows that L-shaped nanoantennas with various dimensions
exhibit different scattering spectra (Figure c), and QDs with varying emission wavelengths
can be selected to be on- or off-resonance with the plasmon resonance
mode. For example, the structure with a configuration of a 60 nm height,
250 nm arm length, and 100 nm arm width has a much stronger scattering
at 800 than 600 nm (pink spectrum in Figure c) while vice versa for the (H 60 nm, L 200 nm, W 50 nm) configuration
(red spectrum in Figure c). Thus, by tuning the L-shape dimensions and choosing different
QDs to match/mismatch the plasmon resonance, we can explore the scattering
effect on the QD localization accuracy. As for the experiment (Figure b), two structure
configurations are fabricated and optical measurements are carried
out. QDs (800 nm emission) are deposited and excited at a wavelength
off the plasmon resonance (642 nm) to excite the emitter only and
limit the antenna background. In this way, we avoid fluorescence absorption
enhancement and isolate the effect in QD emission for polarization-modulated
studies. Experimental details and results will be discussed below.
Figure 1
Dimensions
of the L-shaped gold nanoantenna and scattering cross
sections. (a) Design for FDTD simulations with an L-shaped gold nanoantenna
and a dipole source positioned nearby. (b) SEM image of the fabricated
nanoantenna and QD. QD’s real location measured from SEM can
be fed back to the simulation as an input. (c) Calculated scattering
cross sections of L-shaped Au nanostructures with different dimensions
(x and y are labeled in (b)). For
nanoantennas with different x- and y-dimensions, 600 or 800 nm emission can be scattered weakly or strongly
or vice versa by the designed structure.
Dimensions
of the L-shaped gold nanoantenna and scattering cross
sections. (a) Design for FDTD simulations with an L-shaped gold nanoantenna
and a dipole source positioned nearby. (b) SEM image of the fabricated
nanoantenna and QD. QD’s real location measured from SEM can
be fed back to the simulation as an input. (c) Calculated scattering
cross sections of L-shaped Au nanostructures with different dimensions
(x and y are labeled in (b)). For
nanoantennas with different x- and y-dimensions, 600 or 800 nm emission can be scattered weakly or strongly
or vice versa by the designed structure.To construct a system with plasmonic structures with different
dimensions and single-molecule QDs close to them, we employ a two-step
lithography method (Figure ). The first step defines the L-shaped plasmonic structure,
and the second step sets the QD deposition boundaries. More specifically,
nanoantennas with varying dimensions are first patterned onto an indium
tin oxide (ITO)-coated glass coverslip with electron beam (e-beam)
lithography. This conductive and transparent substrate prepares the
sample for both optical and SEM measurements. The second lithographic
step defines a pattern that prevents QDs from accessing other areas
of the coverslip surface, allowing QDs to deposit only near the inner
corner of the antenna. Then, a drop of a nanomolar QD solution is
placed onto the coverslip to produce a sparse distribution of the
probes. QDs can move around the whole substrate surface through Brownian
motions, and those that reach the predefined area can attach to the
surface through chemical functionalization. The carboxylic acid functional
group in a QD ligand can interact with the ITO surface through a combination
of weak electrostatic interactions, hydrogen bonding, and covalent
bonding between the carboxylate and the indium defect sites.[37] By tuning the QD concentration and the area
during the second lithographic step, we ensure that an individual
unit only has a single plasmonic nanoantenna and a single QD nearby.
This single QD and antenna pair is further verified by the SEM image
(Figure b). The difference
between the dimensions of the fabricated and simulated structures
is negligible. However, this sample fabrication method requires precise
alignment between two e-beam lithographic steps, making the success
rate/yield of fabrication low. Another approach that implements the
dip-pen nanolithography (DPN) method[38] is
also tested (Figure S1). In this approach,
DPN replaces the second lithographic step and directly “writes”
single QDs next to nanoantennas. More details about DPN is discussed
in SI. Compared to point accumulation for
imaging in nanoscale topography (PAINT) methods that have been used
for previous research, which relies on the absorption and release
of freely diffusing probes at random locations on the sample surface,[28] our method immobilizes QDs to sites close to
the antenna with selective binding and can be only removed though
specific washing steps. Instead of counting on the probe to stay in
the field of view (FOV) long enough to emit enough photons (especially
at low excitation power), we can keep QDs stationary with a well-defined
dipole moment orientation throughout the whole acquisition for better
PSF fitting and localization with high precision at multiple imaging
conditions (e.g., excitation and emission polarization). The interantenna
spacing is designed to be 5 μm to avoid interactions between
plasmonic nanoantennas while keeping a reasonable measurement throughput.
For each wide-field imaging run, images from up to 25 pairs of single
antennas and QDs can be collected. To ensure that emitters at different
locations of the FOV share the same excitation intensity and polarization,
the optical setup is first calibrated with free QDs at different polarizations.
More details about the sample fabrication are provided in the Methods.
Figure 2
Two-step e-beam lithography sample fabrication
procedures. (a)
For the first e-beam lithography step, L-shapes with different dimensions
are patterned. (b) Pattern of the second lithography layer is aligned
to the first layer and is composed of squares that are accessible
to QDs. After the exposed photoresist is removed, the ITO coverslip
was soaked in the diluted QD solution. The carboxyl group in QD ligands
can then bind to ITO and stay static on the coverslip surface. (c)
Photoresist lift-off step washes the unexposed photoresist off the
coverslip, taking away QDs that are not bound to the ITO surface.
After rinsing and drying, the sample is ready for optical measurements.
Two-step e-beam lithography sample fabrication
procedures. (a)
For the first e-beam lithography step, L-shapes with different dimensions
are patterned. (b) Pattern of the second lithography layer is aligned
to the first layer and is composed of squares that are accessible
to QDs. After the exposed photoresist is removed, the ITO coverslip
was soaked in the diluted QD solution. The carboxyl group in QD ligands
can then bind to ITO and stay static on the coverslip surface. (c)
Photoresist lift-off step washes the unexposed photoresist off the
coverslip, taking away QDs that are not bound to the ITO surface.
After rinsing and drying, the sample is ready for optical measurements.Polarization-Resolved Single-Molecule Localization-Based
Microscopy. This section describes the experimental approach
that controls and studies the interaction between the single-molecule
emitter and the plasmonic antenna with super-resolution. We focus
on three strategies to modulate and analyze the coupling between the
fluorescent emitter and plasmonic nanoantenna: (i) modulate the polarization
of the wide-field excitation laser; (ii) analyze the polarization
of the QD emission pattern in the far-field; (iii) tune the QD emission
spectrum to be on- or off-plasmon resonance. As shown in Figure S2a, the modulation approach (i) is achieved
by adding a polarizer in the excitation pathway and (ii) by adding
an analyzer in the emission pathway of the wide-field fluorescence
microscopy. Both the polarizer and analyzer are mounted on rotating
stages (Figure S2b). As the polarizer/analyzer
rotates, the far-field images of QDs are acquired at different excitation/emission
polarization combinations. The excitation is filtered out, and the
emission fluorescence is collected. No noticeable sample drift was
observed during the measurement duration.For a QD without plasmonic
structures nearby, the fluorescence
emission increases linearly with the excitation up to around half
of the saturation intensity.[22] However,
depending on the spectral overlap of the QD emission and plasmon resonance,
the intensity of fluorescence emitted from the QD–plasmon system
is no longer linear with the excitation. Instead, it is strongly affected
by whether the QD emission is on- or off-resonance with the plasmon
resonance mode.[39] More specifically, previous
research has shown that, based on the emitter’s location and
emission spectra, the coupling strength between the emitter and the
antenna fluctuates, causing shifts in the fitted location of the emitter.[39] As for the modulation approach (iii), we start
with CdSe/ZnS QDs with an emission peak at around 800 nm. The results
shown in the rest of this manuscript are generated based on this experimental
setting. QDs with an off-resonance emission or dual emissions like
Mn+-doped CdS QDs, which have simultaneous on- and off-resonance
emissions, can be used to further investigate the effect of spectral
overlap on the coupling and the shift in emitter localization.For the polarization modulation experiment, we adopt a two-step
measurement: (1) a measurement without the polarizer and analyzer
to index the apparent location of QDs together with extraction of
the local near-field intensity, followed by (2) measurements with
a modulated linearly polarized light at several different excitation/emission
polarization angles. The imaging system with excitation only, emission
only, and both polarization modulations together are first calibrated
and characterized with sparsely spin-coated QDs. Measurements are
carried out on each individual unit composed of one antenna and one
QD. The polarizer and the analyzer rotate separately from 0 to 360°
with 45° intervals, generating 81 polarization combinations in
total. For each combination, a wide-field fluorescence image is captured
(Figure ). Afterward,
the centroid position of each diffraction spot is determined. There
are multiple methods for extracting the centroid position of the probe.
One recently introduced is using a basis of Hermite–Gaussian
functions as a PSF model to fit abnormal, multilobed PSFs generated
from a system with dye labels close to plasmonic nanowires.[29] Here, the multilobed PSF is not observed in
our QD–antenna system. Instead, we start with a typical 2D
Gaussian function to fit the far-field image and apply the maximum
likelihood estimation method (MLEM) to optimize this PSF to give us
the best fit, returning an estimation of the QD’s apparent
position.[40] Even though the degree of final
localization precision is heavily dependent upon the number of photons
collected and the fluorescence background level, this fitting method
has shown overall good performance for localizing QDs (or other emitting
probes) in free space for both simulation and experimental results.
Figure 3
QD images
at different emission polarizations. (a) Bright-field
image of nanostructure + QD. Since the size of the structure is below
the diffraction limit, only the scattering light can be imaged without
details of the structure. (b) Fluorescence image of QDs close to plasmonic
structures. The differencein the QD brightness may come from a different
coupling strength between the QD and the structure. Scale bar: 1 μm.
(c) Images of a single-molecule QD with different analyzer polarizations
and displacements in another field of view. Since QDs have degenerate
excitation dipole moments, changing the excitation polarization on
“free” QDs would not affect the image. With the changing
emission polarization, the center of the QD images shifts. The analyzer
polarization is labeled at the top of each fluorescence image, along
with the displacement (nm unit) of the fitted center compared to the
sum image.
QD images
at different emission polarizations. (a) Bright-field
image of nanostructure + QD. Since the size of the structure is below
the diffraction limit, only the scattering light can be imaged without
details of the structure. (b) Fluorescence image of QDs close to plasmonic
structures. The differencein the QD brightness may come from a different
coupling strength between the QD and the structure. Scale bar: 1 μm.
(c) Images of a single-molecule QD with different analyzer polarizations
and displacements in another field of view. Since QDs have degenerate
excitation dipole moments, changing the excitation polarization on
“free” QDs would not affect the image. With the changing
emission polarization, the center of the QD images shifts. The analyzer
polarization is labeled at the top of each fluorescence image, along
with the displacement (nm unit) of the fitted center compared to the
sum image.When the emission is coupled into
a plasmonic antenna, it is redirected
and reradiated into the far-field compared to the radiation from the
emitter alone. Due to the strong electromagnetic coupling of the emitter
to the nearby plasmonic structure, the far-field radiation pattern
of the emitter will be distorted, introducing imprecision to the localization
of single emitters during this fitting step. The final QD far-field
images are affected by a combination of interactions, like scattering
from the nanostructure surface, dielectric distortion of the emission,
and Young’s interference effect between the emitter and the
image dipole.[30,31] Thus, modulation and characterization
of electromagnetic coupling strength between QDs and nearby metallic
structures is crucial to understand and counteract mislocalization
of QDs.Mislocalization of QDs Close to Plasmonic Structures. The fitted QD centers at different polarization combinations are
compared to the center determined by the sum image of all polarization
combinations. The spatial displacement is calculated as the difference
between the two centers. The rotation of the polarizer in the excitation
path does not show the impact on the emitter displacement, since QDs
have degenerate excitation dipoles. This result verifies the result
discussed in ref (29) that the excitation polarization does not affect the PSF distortion.
However, as the analyzer rotates, we observe clear shifts in apparent
QD center positions (mislocalizations) at different emission polarizations
in both simulation and experiments. As shown in Figure b, experimental displacement of the emitter
in x (parallel) and y (perpendicular
to the bottom arm of the L-shape) directions are plotted over one
full circle of the analyzer rotation. To compensate for the discrepancy
of photoblinking behaviors captured at different polarizations and
its effect on the imaged fluorescence intensity, the final plot is
the average over four full circles of the polarizer rotation. Photobleaching
of QDs is negligible. For cases where photobleaching is observed,
the measurement sets are removed from the analysis pipeline. As expected,
the shift of the emitter center positions in both x- and y-directions is periodic and repeats every
180° of the analyzer rotation (Figure ). As the analyzer rotates, the shifts in
the x- and y-axes vary and can be
larger than 100 nm. After the optical measurement, the distance between
the inner corner of the L-shaped nanoantenna and the QD is measured
using SEM with the help of indexing markers patterned during the sample
fabrication. This distance is regarded as the ground truth for the
emitter’s location and can be further used as the position
of the dipole source for the simulations (Figure a). Since the sample fabrication method requires
precise alignment between two e-beam lithographic steps and the SEM
step has a reasonably low success rate, we were able to yield one
successful iteration that captures the QD position in both optical
measurement and SEM (Figure ).
Figure 4
Pattern matching to determine the emitter’s position. Simulated
(a) and experimentally measured (b) displacement are matched, and
the difference in the center location is the value of mislocalization.
The change of mislocalization shares the same pattern as the simulation
result. The experimental emitter position (81 nm, 28 nm) is calculated
by fitting the sum image of images captured at all polarizer and the
analyzer polarizations. The emitter position input for the simulation
(107 nm, 37 nm) is from the SEM image of the same nanoantenna/QD system.
The position difference shows the mislocalization in fluorescence
measurement, while the matching pattern between the simulation and
experiment plots shows the feasibility of using simulation to study
the complex interaction between the nanoantenna and QD. Based on the
magnitude and direction of the displacement, the plots from the experiment
can be compared with plots in the simulation collection, and patterns
are matched using a least-squares model fit.
Pattern matching to determine the emitter’s position. Simulated
(a) and experimentally measured (b) displacement are matched, and
the difference in the center location is the value of mislocalization.
The change of mislocalization shares the same pattern as the simulation
result. The experimental emitter position (81 nm, 28 nm) is calculated
by fitting the sum image of images captured at all polarizer and the
analyzer polarizations. The emitter position input for the simulation
(107 nm, 37 nm) is from the SEM image of the same nanoantenna/QD system.
The position difference shows the mislocalization in fluorescence
measurement, while the matching pattern between the simulation and
experiment plots shows the feasibility of using simulation to study
the complex interaction between the nanoantenna and QD. Based on the
magnitude and direction of the displacement, the plots from the experiment
can be compared with plots in the simulation collection, and patterns
are matched using a least-squares model fit.Next, a large set of FDTD simulations was performed to generate
far-field images with different conditions for both on- and off-resonance
emitters close to metallic systems. Based on the mislocalization trend
as the emitter moves away from the inner corner of the antenna (Figure a,b), a simple qualitative
model can be adopted to understand the interaction between the emitter
and the plasmonic antenna. In addition, this model can also be used
to determine how the interaction strength can influence the level
of mislocalization for emitters at different locations. For an L-shaped
nanoantenna and QDs with on-resonance emission, the displacements
are determined by superposition of dipole signals. Specifically, the
system can be modeled as one quantum dot, which can be considered
as a single dipole, interacting with two induced dipoles, each from
one arm of the L-shaped metallic structure. The observed far-field
image is formed by the superposition and interference of radiation
from the three dipoles in total. The left arm mainly changes the displacement
in the x-direction, while the bottom arm changes
the displacement in the y-direction. Compared to
other one-dimensional structures studied in previous works, one significant
difference for this system is that the emitter is coupled at two directions
simultaneously with different coupling strengths. When the emitter
is located on the symmetry axis of the L-shape, the interactions with
the two arms are identical, and the displacements in the x- and y-directions are similar (Figure c). As the emitter moves asymmetrically
away from one arm (for example, the left arm), the displacement range
in the x-direction would first increase and then
decrease. For the specific position shown in Figure c, when the emitter is away from the left
arm (125 nm), its interaction with the left dipole is minimal so that
its displacement in the x-direction is less than
20 nm. At the same time, its emission is still coupled to the bottom
arm, making the maximum displacement in the y-direction
to be almost 90 nm. Meanwhile, the oscillation of displacement as
the emitter moves away from one arm shows that besides the superposition
of radiation from multiple dipoles, interference between them also
plays an essential role in determining the final displacement. Depending
on the relative phases between three dipoles, a constructive/destructive
interference may move the fitted center closer to/further away from
the interface.[30] For instance, if the dipole
(QD) is orientated parallel to the bottom arm, it interferes constructively
with the induced dipole from the left arm and destructively with the
one from the bottom arm. Thus, the mislocalization in the x-direction (0° emission polarization angle) fluctuates
but stays negative for the measured distance range (Figure ), which shares similar patterns
as in ref (30). Depending
on how the QD is located and oriented in relation to the arm orientation,
constructive or destructive interference may prevail.
Figure 5
Calculated displacement
for emitters at different distances to
the L-shaped nanoantennna. (a) Cartoon demonstrating emitters at different
locations that interact with two induced dipoles, each from one arm
of the L-shape. The displacement in the x-direction
for QDs positioned 25, 75, and 125 nm away from the left arm is plotted
in (b). The colors of emitters correspond to plot colors. (c) Simulated
mislocalizations of single-molecule QDs positioned at the inner corner
with different distances to the L-shape. As the analyzer rotates from
0 to 360°, the shifts in the x- and y-axes vary and can be as large as 100 nm. The displacement
is caused mainly by the superposition of the radiations from one original
dipole plus two induced dipoles as well as the interference between
them. The emitter at 75 nm has the most notable fluctuation and the
greatest absolute displacement. When the emitter is too close (25
nm), besides superposition, destructive interference reduces the displacement
in the x-direction. When it is far away from the
interface, the displacement decays.
Calculated displacement
for emitters at different distances to
the L-shaped nanoantennna. (a) Cartoon demonstrating emitters at different
locations that interact with two induced dipoles, each from one arm
of the L-shape. The displacement in the x-direction
for QDs positioned 25, 75, and 125 nm away from the left arm is plotted
in (b). The colors of emitters correspond to plot colors. (c) Simulated
mislocalizations of single-molecule QDs positioned at the inner corner
with different distances to the L-shape. As the analyzer rotates from
0 to 360°, the shifts in the x- and y-axes vary and can be as large as 100 nm. The displacement
is caused mainly by the superposition of the radiations from one original
dipole plus two induced dipoles as well as the interference between
them. The emitter at 75 nm has the most notable fluctuation and the
greatest absolute displacement. When the emitter is too close (25
nm), besides superposition, destructive interference reduces the displacement
in the x-direction. When it is far away from the
interface, the displacement decays.Ideally, if the simulation and experimental settings are matched,
the magnitude of the polarization-dependent PSF distortion and emitter
displacement can be mapped out around the plasmonic nanoantenna. This
mapping can be utilized to help deduce the actual emitter position
from the distorted PSF by measuring the relative shifts. Meanwhile,
the experimental results can be further fed back to simulations in
order to improve the predictive power. With this mapping, the SEM
step can be finally abandoned, and the real emitter position can be
obtained purely from matching the experimental and simulation displacement
plots. However, the sample preparation method requires high alignment
precision between two lithographic steps and has proven to be challenging
with respect to (1) nanostructures being fabricated with designed
dimensions, (2) QDs being positioned close to nanostructures, (3)
QDs staying fluorescent during the whole optical measurement, and
(4) real locations of QDs being accessible using SEM. Currently, the
“post mortem” step with SEM to find the real position
of the emitter has a reasonably low success rate, and we were able
to yield only one successful iteration that “closes the loop”
(Figure b). Alternatively,
we generate a library of simulated images and plots and match the
displacement pattern from the experiment to the simulation result
using a least-squares model fit. The dipole source position input
from the simulation is then used as the “real” position
of the emitter when we see the change of displacement share the same
pattern. An alternative method for sample preparation using DPN is
presented in the SI.Detection
of Plasmon-Induced Emission Polarization Rotation. In addition
to the substantial modification that the QD–antenna
interaction has on the apparent QD localization, we found that this
interaction also strongly influences the polarization of the emitted
light from this system (mispolarization). Previous studies have reported
that the fluorescence emission rate and polarization can be redirected
depending on the design of the antenna (e.g., Yagi-Uda antenna or
nanorod).[28,32] The discussion below focuses on a more complex
antenna shape, an L-shape, and explores the change in polarization
resulted from the plasmon-coupled emission. By measuring the emission
polarization of a single-molecule QD coupled to an individual plasmonic
nanoantenna, we reveal that QD’s emission polarization can
be significantly rotated depending on the emitter’s position.Far-filed images for QDs with different dipole orientations and
emission wavelengths at various positions next to the antenna (H 60 nm, L 200 nm, W 50
nm) are calculated using the same simulation settings as described
in previous sections. To quantify the rotation of the emission polarization,
we define the apparent emission polarization (θapp) of each emitter by comparing the total intensity of images collected
at two perpendicular directionswhere I⇆ and I↑↓ are intensities
collected at directions parallel and perpendicular to the bottom arm
of the L-shape, respectively. The bottom arm and left arm are aligned
to the x-axis and y-axis of a Cartesian
coordinate system, respectively. Intensities are always positive,
and the arctangent function maps the apparent emission polarization
into the first quadrant (0 ∼ 90°). The 2D projection of
the emission polarization at the image plane can be collected with
a polarization-resolved optical setup shown in the previous section.
Theoretically, a free single-molecule QD at the image plane can be
considered as a dipole source, whose emission polarization is determined
solely by its dipole orientation. However, when interacting with the
plasmonic antenna nearby, a combination of near-field coupling, superposition,
and interference with the nanoantenna far-field emission would introduce
mislocalization and mispolarization, which hinders us from abstracting
the actual plasmonic near-field intensity.[24−27,30,31] Moreover, when a high numerical-aperture
(NA) objective lens is used during image acquisitions, it has been
reported that the cross-talk between different polarization channels
would deviate the calculated θapp.[28] This issue can be resolved by calibrating the imaging system
using a control sample with free QDs randomly positioned on the coverslip
for simulations or experiments. In this way, the relationship between
the expected and the calculated θapp can be mapped
and used to correct the measurements.Since the L-shaped metallic
structure can be considered as two
nanorods that are symmetrically connected, the rotation of the apparent
polarization angle is dependent on the position and orientation of
the emitter with respect to the symmetry axis. Table shows a compilation of the calculated mispolarization
of 800 nm emission QDs under different conditions. The large rotation
for 0- and 90°-oriented dipoles is mainly contributed by the
superposition of the induced localized surface plasmon (LSP) modes.
Radiation from the bottom arm increases I⇆, while radiation from the left arm increases I↑↓. If the scattered radiation intensities from
two arms are equal, the detected apparent emission polarization is
expected to be 45°. For instance, for emitters positioned on
the symmetry axis (e.g., (25 nm, 25 nm)) away from the inner corner
of the L-shape, the interaction between the emitter and the two arms
is equal. Therefore, both 0- and 90°-oriented dipoles are rotated
toward 45°, while the orientation of the 45°-oriented dipoles
is unchanged (Table and Figure a). The
degrees of rotation for 0 and 90° orientations are symmetrical
as expected. As the emitter moves away from both arms along the symmetry
axis (e.g., (75 nm, 75 nm)), the induced radiation from both arms
decreases, causing less rotation of the detected θapp toward 45°. When the emitter is off the symmetry axis, depending
on its distance to two arms, all three dipole orientations are “mispolarized”.
When the QD moves away from the left arm (e.g., (75, 25 nm) and (125,
25 nm) in Figure ),
the interaction between them decreases (Table ). A higher I⇆ of the image (a smaller θapp) is due to more dominant
emission from the bottom arm. In this regard, θapp rotates more toward 0° for both 0 and 90° dipole orientations.
Conversely, for QDs further away from the bottom arm, θapp is closer to 90° because of the superposition of the
induced LSP emission at the left arm and the original QD emission.
Table 1
Calculated Apparent Emission Polarization
(deg) for Different Dipole Orientations
dipole orientation (deg)
dipole
position relative to L-shape center (nm)
free dipole w/p antenna
(25, 25)
(75, 75)
(75, 25)
(125, 25)
(25,
75)
0
24.97
15.75
16.17
6.26
26.09
5.74
45
45.00
45.00
49.26
52.19
40.74
45.00
90
60.71
74.25
63.90
61.56
73.83
84.26
Figure 6
Plasmon-induced
rotation of the QD emission polarization. (a) Calculated
spectrum of rotation of the apparent polarization angle for a QD positioned
at the inner corner with a distance of (25 nm, 25 nm) to the L-shaped
nanoantenna (L 200 nm, W 50 nm).
For an emitter positioned on the symmetry axis, since its interactions
with the two arms are identical, the apparent polarization is expected
to rotate toward the axis direction. (b) Comparison of the θapp (x-polarization) and plasmon resonance
spectrum. The apparent polarization angle spectrum shares a similar
pattern as the scattering cross section under 800 nm, meaning that
the scattering from the interfaces of the two arms plays an essential
role in polarization rotation within the visible light spectrum. Within
the visible range, the biggest emission polarization rotation toward
45° is observed around the plasmon resonance peak because of
the enhanced scattering from the nanoantenna. The difference between
two spectra suggests that, besides scattering, mispolarization is
attributed to other factors like interference, which needs further
investigation.
Plasmon-induced
rotation of the QD emission polarization. (a) Calculated
spectrum of rotation of the apparent polarization angle for a QD positioned
at the inner corner with a distance of (25 nm, 25 nm) to the L-shaped
nanoantenna (L 200 nm, W 50 nm).
For an emitter positioned on the symmetry axis, since its interactions
with the two arms are identical, the apparent polarization is expected
to rotate toward the axis direction. (b) Comparison of the θapp (x-polarization) and plasmon resonance
spectrum. The apparent polarization angle spectrum shares a similar
pattern as the scattering cross section under 800 nm, meaning that
the scattering from the interfaces of the two arms plays an essential
role in polarization rotation within the visible light spectrum. Within
the visible range, the biggest emission polarization rotation toward
45° is observed around the plasmon resonance peak because of
the enhanced scattering from the nanoantenna. The difference between
two spectra suggests that, besides scattering, mispolarization is
attributed to other factors like interference, which needs further
investigation.The similarity between the
θapp and the antenna
scattering spectrum further verifies our hypothesis. In Figure a, the relationships between
θapp and the emission wavelength of the emitter positioned
at (25, 25 nm) are plotted for three different dipole orientations.
As expected, the 0°- and 90°-oriented dipoles are mispolarized
toward the symmetry axis, while 45°-oriented keeps unchanged
(Figure a). The greatest
rotation is achieved at around the plasmon resonance peak, meaning
that the on-resonance emission has a stronger scattering from both
interfaces, rotating the apparent emission polarization more toward
45°. However, the difference between the spectrum of θapp and scattering efficiency (Figure b), like double peaks and peak center shift,
indicates that even though the scattering plays a major role in the
mispolarization, there exist other factors that determine the final
degree of rotation (e.g., interference between the QD and induced
dipole emission). The two spectra diverge after around 800 nm, meaning
that the same theoretical explanation might not be applicable for
the infrared region. More investigation is needed to characterize
other possible mechanisms.In summary, we have demonstrated
that the near-field interaction
between a plasmonic structure and a nearby emitter is dependent on
the emitter’s relative position, emission polarization, and
emission wavelength and can induce significant mislocalization and
mispolarization during an emitter’s far-field detection and
analysis. By isolating effects from the L-shaped nanoantenna’s
two arms at two orthogonal polarization directions, our study elucidates
the mechanisms underlying modification of far-field emission polarization
and localization in a QD–antenna system. Notably, we have confirmed
that the strong interaction between the emitter and the nanoscale
plasmonic structure can introduce substantial error to emitter localization.
The apparent emission polarization can also measure the interaction
strength. The emission polarization rotates toward the symmetry axis
when the emitter is located on the axis. Depending on which arm emitter
is closer to, the emission polarization rotates toward either the
left or bottom arm of L-shape. By employing FDTD simulations and a
polarization-resolved single-molecule localization-based method, we
have revealed that the displacement of the emitter’s localization
originates mainly from the interference between the emitter and induced
dipole emissions. In contrast, the superposition of the emitter and
scattered radiation plays a more critical role in the emission polarization
rotation. Even though we focused on a specific example, a similar
analysis pipeline can be applied to study a more complex system (e.g.,
a metallic or dielectric nanoantenna whose shape contains sharp and
rounded corners).This topic can be further extended both in
theory and application.
In theory, an analytical model to quantitatively understand this QD–antenna
system can be constructed and used to predict the true plasmonic near-fields.
The effect of near-field coupling, far-field superposition, and interference
can be implemented into the model and correct for the mislocalization
and mispolarization. This model would provide a practical method that
benefits many applications that rely on measuring field strengths
with high precision, ranging from biology to high-speed integrated
circuits to optical quantum computing. As for application, more simulated
and polarization-modulated fluorescence images can be collected using
other plasmonic structures, which help connect the emitter mislocalization
at different emission polarizations to the shape of the plasmonic
nanoantenna and the emitter’s distance to it. This information
can be fed to a machine learning model (e.g., a convolutional neural
network, CNN) to solve the inverse problem of predicting the plasmonic
structure based on the far-field images. The L-shape will be one of
the base structures for the model, and together with other base structures
like nanowires and nanodisks, the whole contour of the structure can
be determined by combining base structures.
Methods
FDTD Simulation and QD Image Generation. Finite-difference
time-domain (FDTD) simulations were performed using a free and open-source
software package called Meep. Two types of simulations are carried
out: (a) spectrum of scattering and absorption cross sections of L-shaped
nanoantennas using direct plane wave illuminations and (b) electromagnetic
near-field mapping of the QD–antenna system and image generation
with a far-field projection. For all calculations, we assumed a background
refractive index of 1 to mimic the dry sample condition in air. A
glass substrate layer with a refraction index equal to 1.52 is positioned
below the plasmonic nanoantenna. The dielectric function of gold is
obtained from Johnson and Christy.[41] For
(b), we consider QDs as dipole sources and simulated the radiation
patterns of dipoles oriented perpendicular and parallel with respect
to each arm of the L-shape and along the symmetry axis. A full range
of QD distances to the L-shape’s inner corner and L-shape with
different dimensions are also calculated. The dipole source orientation
is assumed to be fixed under experimental conditions. A monitor is
set up below the nanoantenna and QD to measure the electric fields
of the near-field. The collection angles that fall outside the NA
of the objective lens are filtered out. The far-field projection and
image generation are then calculated using a chirped-z transformation
in MATLAB. The radiation of the isotropic emitter is calculated by
adding together the images of the dipole source perpendicular and
parallel to the antenna arm. This image can then be fitted with a
2D Gaussian function to determine the emitter’s apparent location
and compared with the input location of the simulation. Relevent data
and codes for simulations and data analysis are available on figshare
(DOI: 10.6084/m9.figshare.19640544).Sample Fabrication. Samples were fabricated
on
ITO-coated glass coverslips (Nanocs). First, the coverslip is cleaned
by a rinse with acetone, isopropanol, and DI water in sequence. A
thin film (∼180 nm) of poly(methyl methacrylate) (PMMA) is
then spin-coated onto the clean coverslip and baked in preparation
for the pattern writing. L-shapes with various dimensions and markers
are patterned into the photoresist using electron beam lithography
(first layer). The pattern is developed in a MIBK/IPA 1:3 solution,
followed by a plasma etching step to create sharp edges and improve
metal adhesion to the surface. A layer of gold (60 nm) is then deposited
using an electron beam evaporator (CHA) with a wetting layer of titanium
(1 nm). After the lift-off step in acetone, gold on areas without
electron beam exposure are removed, leaving only L-shaped antennas
on the coverslip. A similar sample preparation step is carried for
the second layer of electron beam lithography. For this layer, the
instrument can automatically align the markers of two layers and pattern
a 200 nm square next to each L-shape. After the exposed photoresist
was removed, the ITO coverslip was soaked in a diluted QD solution
(1 μm of Qdot 800 ITK Carboxyl Quantum Dots solution) for 60
min, followed by the photoresist lift-off, rinsing, and drying.Optical Measurements. The samples were illuminated
using a 642 nm laser diode source (Coherent) using an inverted microscope
with a 100× oil-immersion objective (NA 1.49, Nikon). The excitation
is filtered using a dichroic and an 800 nm long-pass filter. The excitation
and emission polarizations are controlled through the polarizer and
analyzer, respectively. Both the polarizer and analyzer are mounted
on separate rotating stages controlled by Arduino, and QD images at
different excitation/emission polarization combinations are recorded.
Fluorescence is collected by an electron-multiplying charge-coupled
device (EMCCD) camera with an extra set of lenses to increase the
magnification further. The sample is mounted onto the sample stage
and stablized waited until no apparent drift is observed. In each
field of view (FOV), at least 25 QD–antenna units can be measured
simultaneously. For each FOV, images are taken over four complete
rotations of the polarizer (from 0 to 360° with 45° intervals).
Later, the same FOV can be imaged using SEM with the help of patterned
markers, and the true location of QDs can be compared with the measured
locations.
Authors: Chanda Ranjit Yonzon; Eunhee Jeoung; Shengli Zou; George C Schatz; Milan Mrksich; Richard P Van Duyne Journal: J Am Chem Soc Date: 2004-10-06 Impact factor: 15.419
Authors: Alberto G Curto; Giorgio Volpe; Tim H Taminiau; Mark P Kreuzer; Romain Quidant; Niek F van Hulst Journal: Science Date: 2010-08-20 Impact factor: 47.728