| Literature DB >> 35572690 |
Quanfeng Liao1, Yu Yuan1, Weili Zhang1, Jin Deng1, Siying Wu1, Ya Liu1, Yuling Xiao1, Mei Kang1.
Abstract
Objective: This study aimed to develop a new rapid and simplified carbapenemase detection method (rsCDM) for detection and characterization of carbapenemase with 3-aminophenylboronic acid (APBA), ethylenediaminetetraacetic acid (EDTA), and cloxacillin (CLO) β-lactamase inhibitors.Entities:
Keywords: AmpC; carbapenem-resistant Enterobacterales; carbapenemase; phenotypic assay; rsCDM
Year: 2022 PMID: 35572690 PMCID: PMC9097014 DOI: 10.3389/fmicb.2022.860288
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 6.064
FIGURE 1Example of the carbapenemase and AmpC enzyme detection test with reading at 4 h, for the rsCDM test. A, imipenem; B, imipenem + APBA; C, imipenem + EDTA; D, imipenem + APBA + EDTA; E, imipenem + CLO. MBL carbapenemase (I), KPC carbapenemase (II), KPC and MBL carbapenemase (III), AmpC with porin changes (IV), ESBL enzyme (V), EDTA negative control (VI).
FIGURE 2Algorithm for interpretation of results, a 10 μg imipenem disk was used, in the presence or absence of β-lactamase inhibitors. APBA, 3-aminophenylboronic acid; CLO, cloxacillin; EDTA, ethylenediaminetetraacetic acid; KPC, KPC carbapenemase; MBL, metallo-β-lactamase; ESBL, extended-spectrum β-lactamase. A, imipenem; B, imipenem + APBA; C, imipenem + EDTA; D, imipenem + APBA + EDTA; E, imipenm + CLO.
Performances of the rsCDM and eCIM tests in Enterobacterales strains.
| β-lactamase (n) | Sensitivity of rsCDM using imipenem (%) | Sensitivity of rsCDM using meropenem (%) | Sensitivity of eCIM (%) | |||||
| 4 h | 6 h | 18 h | 4 h | 6 h | 18 h | |||
| Class A | KPC (88) | 88 (100%) | 88 (100%) | 88 (100%) | 87 (98.7%) | 88 (100%) | 88 (100%) | 88 (100%) |
| Class B | 73 (100%) | 73 (100%) | 73 (100%) | 72 (98.6%) | 73 (100%) | 73 (100%) | 72 (97.3%) | |
| NDM (60) | 60 (100%) | 60 (100%) | 60 (100%) | 60 (100%) | 60 (100%) | 60 (100%) | 60 (100%) | |
| IMP (10) | 10 (100%) | 10 (100%) | 10 (100%) | 10 (100%) | 10 (100%) | 10 (100%) | 9 (90%) | |
| VIM (3) | 3 (100%) | 3 (100%) | 3 (100%) | 2 (66.7%) | 3 (100%) | 3 (100%) | 3 (100%) | |
| Class D | OXA-181 (5) | 0 | 0 | 0 | 0 | 0 | 0 | 5 (100%) |
| Class A + B | KPC and NDM (7) | 7 (100%) | 7 (100%) | 7 (100%) | 7 (100%) | 7 (100%) | 7 (100%) | 0 |
| All carbapenemases (173) | 168 (97.1%) | 168 (97.1%) | 168 (97.1%) | 166 (96.0%) | 168 (97.1%) | 168 (97.1%) | 165 (95.4%) | |
| Class C | AmpC (6) | 0 | 6 (100%) | 6 (100%) | 0 | 2 (33.3%) | 2 (33.3%) | 0 |
| None (46) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
The rsCDM subtraction zone diameter with imipenem and meropenem.
| Subtraction zone diameter with IMI at 4 h | Subtraction zone diameter with IMI at 6 h | Subtraction zone diameter with IMI at 18 h | Subtraction zone diameter with MEM at 4 h | Subtraction zone diameter with MEM at 6 h | Subtraction zone diameter with MEM at 18 h | ||||||||||||||||||||
| Type of carba penemase | Genes | B vs. | C vs. | D vs. | E vs. | B vs. | C vs. | D vs. | E vs. | B vs. | C vs. | D vs. | E vs. | B vs. | C vs. | D vs. | E vs. | B vs. | C vs. | D vs. | E vs. | B vs. | C vs. | D vs. | E vs. |
| Serine carba penemase | 5–10 | 0–4 | 5–11 | 0-4 | 5–11 | 0–3 | 5–11 | 0–4 | 5–12 | 0–4 | 5–11 | 0–2 | 5–9 | 0–4 | 5–10 | 0–1 | 5–10 | 0–4 | 5–10 | 0–2 | 5–11 | 0–1 | 5–11 | 0–1 | |
| MBLs (73) | 0–3 | 5–12 | 5–13 | 0-4 | 0–3 | 5–16 | 5–16 | 0–3 | 0–4 | 8–17 | 7–16 | 0–4 | 0–3 | 5–13 | 5–15 | 0–4 | 0–3 | 5–13 | 5–13 | 0–4 | 0–2 | 5–15 | 5–17 | 0–2 | |
| 0–1 | 5–9 | 5–9 | 0-3 | 0–1 | 5–9 | 5–8 | 0–1 | 0–1 | 5–11 | 5–11 | 0–3 | 0 | 5–9 | 5–9 | 0–2 | 0–1 | 5–9 | 5–10 | 0–2 | 0–3 | 5–13 | 5–14 | 0–2 | ||
| 0–1 | 5–8 | 6–8 | 0-1 | 0–1 | 7–9 | 7–9 | 0 | 0–1 | 5–10 | 6–11 | 0–2 | 0 | 3–9 | 3–9 | 0 | 0 | 6–9 | 6–9 | 0 | 0–1 | 8–11 | 5–11 | 0 | ||
| All (73) | 0–3 | 5–12 | 5–13 | 0-4 | 0–3 | 5–16 | 5–16 | 0–3 | 0–4 | 5–17 | 5–16 | 0–4 | 0–3 | 3–13 | 3–15 | 0–4 | 0–3 | 5–13 | 5–13 | 0–4 | 0–3 | 5–15 | 5–17 | 0–2 | |
| Multi-enzyme (7) | 0–4 | 0–4 | 8–12 | 0 | 0 | 0–3 | 5–10 | 0–2 | 0 | 0 | 6–9 | 0 | 0 | 0 | 7–9 | 0 | 0 | 0–2 | 7–10 | 0 | 0 | 0 | 6–9 | 0 | |
| AmpC (6) | 6–8 | 0–1 | 0–3 | 5-8 | 5–7 | 0–2 | 0–3 | 5–7 | 5–7 | 0–3 | 6–7 | 5–6 | 5–7 | 0–2 | 1–2 | 5–8 | 1–7 | 0–1 | 0–6 | 0–7 | 4–5 | 0–4 | 5–6 | 3–5 | |
IMI, imipenem; MEM, meropenem.
The statistic results of sequencing, rsCDM and eCIM for 225 Enterobacterales isolates.
| Methods | χ2 | Kappa | |
| Sequencing vs. rsCDM using IMI at 4 h | 1.523 | 0.217 | 0.86 |
| Sequencing vs. rsCDM using IMI at 6 h | 0.329 | 0.567 | 0.94 |
| eCIM vs. rsCDM using IMI at 4 h | 0.104 | 0.747 | 0.84 |
| eCIM vs. rsCDM using IMI m at 6 h | 0.969 | 0.325 | 0.79 |
| Sequencing vs. rsCDM using MEM at 4 h | 2.099 | 0.147 | 0.83 |
| Sequencing vs. rsCDM using MEM at 6 h | 1.034 | 0.309 | 0.88 |
| eCIM vs. rsCDM using MEM at 4 h | 0.011 | 0.915 | 0.85 |
| eCIM vs. rsCDM using MEM at 6 h | 0.292 | 0.589 | 0.83 |
IMI, imipenem; MEM, meropenem.