| Literature DB >> 35572597 |
Haipeng Tong1,2, Jinju Sun1, Jingqin Fang2,3, Mi Zhang1, Huan Liu4, Renxiang Xia1, Weicheng Zhou1, Kaijun Liu5, Xiao Chen1,3.
Abstract
Background: The tumor immune microenvironment (TIME) phenotypes have been reported to mainly impact the efficacy of immunotherapy. Given the increasing use of immunotherapy in cancers, knowing an individual's TIME phenotypes could be helpful in screening patients who are more likely to respond to immunotherapy. Our study intended to establish, validate, and apply a machine learning model to predict TIME profiles in non-small cell lung cancer (NSCLC) by using 18F-FDG PET/CT radiomics and clinical characteristics.Entities:
Keywords: lung cancer; machine learning; positron emission tomography/computed tomography; radiomics; tumor immune microenvironment
Mesh:
Substances:
Year: 2022 PMID: 35572597 PMCID: PMC9105942 DOI: 10.3389/fimmu.2022.859323
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 8.786
Figure 1The workflow of overall study. Firstly, we evaluated whether CD8 expression signature could represent the TIME profiles by using the RNA-seq data in TCGA cohort (n = 1145). Then, machine learning model was trained and validated using DPH cohort (n = 221) with 18F-FDG PET/CT radiomics-clinical features to predict CD8 expression status. The model was then applied to predict TIME phenotypes in TCIA cohort (n = 39). The right row is the radiomics workflow.
Figure 2CD8A correlated with other immune expression profiles in TCGA cohort. (A) PPI network of DEGs with integrated scores > 0.20, in which top 30 central genes were obtained (B). The difference in KEGG, immunologic signature (C), and immune cells’ proportion (D) between the CD8-high and CD8-low groups.
Figure 3PET/CT radiomics feature selection and model construction. In PET/CT model, (A) LASSO method was calculated. (B) The final retained features after selection and their corresponding coefficients. (C) Rad-score of each patient in the training and validation sets.
Figure 4ROC curves for differentiating CD8 expression status of these three models (radiomics, clinical, and combined models).
Figure 5Nomogram for CD8 expression status prediction. (A) Nomogram integrating clinical features with Rad-score. (B) The nomogram’s calibration was assessed using calibration curves, which was confirmed by Hosmer–Lemeshow test in the training (left) and validation sets (right).
Figure 6Application of the radiomics-clinical combined model in TCIA cohort. (A) Immune scores of the predicted CD8-high and CD8-low groups. (B) The overall survival curve of these two predicted groups. (C) The enrichment relationship between genes and the main enriched terms (up) and the top 10 BP terms (bottom) in GO analysis.