| Literature DB >> 35566018 |
Svetlana A Kondrashova1, Fedor M Polyancev1, Shamil K Latypov1.
Abstract
In this study, comparative analysis of calculated (GIAO method, DFT level) and experimental 31P NMR shifts for a wide range of model palladium complexes showed that, on the whole, the theory reproduces the experimental data well. The exceptions are the complexes with the P=O phosphorus, for which there is a systematic underestimation of shielding, the value of which depends on the flexibility of the basis sets, especially at the geometry optimization stage. The use of triple-ζ quality basis sets and additional polarization functions at this stage reduces the underestimation of shielding for such phosphorus atoms. To summarize, in practice, for the rapid assessment of 31P NMR shifts, with the exception of the P=O type, a simple PBE0/{6-311G(2d,2p); Pd(SDD)}//PBE0/{6-31+G(d); Pd(SDD)} approximation is quite acceptable (RMSE = 8.9 ppm). Optimal, from the point of view of "price-quality" ratio, is the PBE0/{6-311G(2d,2p); Pd(SDD)}//PBE0/{6-311+G(2d); Pd(SDD)} (RMSE = 8.0 ppm) and the PBE0/{def2-TZVP; Pd(SDD)}//PBE0/{6-311+G(2d); Pd(SDD)} (RMSE = 6.9 ppm) approaches. In all cases, a linear scaling procedure is necessary to minimize systematic errors.Entities:
Keywords: DFT calculations; NMR chemical shifts; palladium complexes; phosphorus
Mesh:
Substances:
Year: 2022 PMID: 35566018 PMCID: PMC9105066 DOI: 10.3390/molecules27092668
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.927
Figure 1Correlation of calculated (PBE0/{6-311G(2d,2p); Pd(SDD)}//PBE0/{6-31+G(d); Pd(SDD)}) vs. experimental 31P CSs for palladium complexes 1–39. Complexes based on σ-donor ligands (●), charged palladium complexes based on σ-donor ligands (●), complexes containing P=O groups (● are the P=O phosphorus, ● are other phosphorus atoms in these types of complexes), and complexes based on π-donor ligands (●).
Figure 2“Training” set of palladium complexes.
R2 dependence on combination used in the calculations for the “training” set of Pd complexes (2, 9, 17, 22–23, 26, 28–30, 32, 38).
| Entry | Combination | Basis Set |
| Δ | |
|---|---|---|---|---|---|
| Elements | Pd | ||||
| 1 | comb_1 | 6-311G(2d,2p)//6-31+G(d) | SDD//SDD | 0.936 | 24 |
| 2 | comb_2 | 6-311G(2d,2p)//6-31+G(2d) | SDD//SDD | 0.951 | 19 |
| 3 | comb_3 | 6-311G(2d,2p)//6-311+G(d) | SDD//SDD | 0.944 | 22 |
| 4 | comb_4 | 6-311G(2d,2p)//6-311+G(2d) | SDD//SDD | 0.955 | 18 |
| 5 | comb_5 | 6-311+G(2d,2p)//6-311+G(2d) | SDD//SDD | 0.959 | 18 |
| 6 | comb_6 | 6-311G(2d,2p)//6-311+G(3df) | SDD//SDD | 0.959 | 14 |
| 7 | comb_7 | 6-311G(2d,2p)//6-311+G(2d) | def2-TZVPD//def2-TZVPD | 0.953 | 19 |
| 8 | comb_8 | 6-311G(2d,2p)//6-311+G(2d) | SDD//DKH3-DZP | 0.904 | 20 |
| 9 | comb_9 | 6-311G(2d,2p)//6-311+G(2d) | DKH3-DZP//DKH3-DZP | 0.829 | 28 (65) |
| 10 | comb_10 | cc-pVTZ//6-311+G(3df) | SDD//SDD | 0.950 | 15 |
| 11 | comb_11 | pc-2//6-311+G(3df) | SDD//SDD | 0.943 | 19 |
| 12 | comb_12 | def2-TZVP//6-311+G(3df) | SDD//SDD | 0.965 | 9 |
| 13 | comb_13 | def2-TZVP//6-311+G(2d) | SDD//SDD | 0.964 | 13 |
| 14 | comb_14 | TZV//6-311+G(3df) | SDD//SDD | 0.833 | 68 |
| 15 | comb_15 | def2-TZVP//def2-TZVP | SDD//SDD | 0.964 | 11 |
| 16 | comb_16 | 6-311G(2d,2p)//cc-pVDZ | SDD//SDD | 0.911 | 36 |
| 17 | comb_17 | 6-311G(2d,2p)//cc-pVTZ | SDD//SDD | 0.953 | 17 |
| 18 | comb_18 | 6-311G(2d,2p)//pc-2 | SDD//SDD | 0.958 | 11 |
| 19 | comb_19 | 6-311G(2d,2p)//def2-TZVP | SDD//SDD | 0.956 | 15 |
| 20 | comb_20 | TZV//TZV | SDD//SDD | 0.689 | 118 (101) |
| 21 | comb_21 | cc-pVTZ//6-31+G(d) | SDD//SDD | 0.927 | 22 |
| 22 | comb_22 | cc-pVTZ//cc-pVDZ | SDD//SDD | 0.901 | 37 |
Basis sets used for shielding calculation//geometry optimization steps; average deviation from the general correlation line for P=O phosphorus atoms; in brackets average deviation from the general correlation line for P=P phosphorus atoms.
Figure 3R2 dependence for the “training” set of Pd-complexes on combinations used in calculations. In all cases, the functional was fixed to the PBE0.
Figure 4Relative time spent for 22 using different basis sets at the geometry optimization stage (a) and calculation of 31P shift (b).
Figure 5Correlation of calculated (PBE0/{6-311G(2d,2p); Pd(SDD)}//PBE0/{6-311+G(2d); Pd(SDD)}) vs. experimental 31P CSs for palladium complexes 1–39. Notation of the complexes is the same as that in Figure 1.
Empirical scaling factors obtained by the linear regression analysis of calculated and experimental δ31P for the title Pd complexes.
| Level of Theory |
| Slope | Intercept |
|
|---|---|---|---|---|
| PBE0/6-311G(2d,2p)//PBE0/6-31+G(d) | 0.954 | 1.1766 | −12.297 | 8.9 |
| PBE0/6-311G(2d,2p)//PBE0/6-311+G(2d) | 0.963 | 1.1346 | −13.8962 | 8.0 |
| PBE0/def2-TZVP//PBE0/6-311+G(2d) | 0.972 | 0.9297 | 1.1235 | 6.9 |
Figure 6Structures of complexes 35 and 35a with experimental (green) and calculated (black) 31P CSs (in ppm) included.