| Literature DB >> 35565991 |
Nhu-Ngoc Dang1, Hoang-Nam Pham1, Isabelle Kleiner2, Martin Schwell3, Jens-Uwe Grabow4, Ha Vinh Lam Nguyen3,5.
Abstract
The gas-phase structures of the fruit ester methyl hexanoate, CH3-O-(C=O)-C5H11, have been determined using a combination of molecular jet Fourier-transform microwave spectroscopy and quantum chemistry. The microwave spectrum was measured in the frequency range of 3 to 23 GHz. Two conformers were assigned, one with Cs symmetry and the other with C1 symmetry where the γ-carbon atom of the hexyl chain is in a gauche orientation in relation to the carbonyl bond. Splittings of all rotational lines into doublets were observed due to internal rotation of the methoxy methyl group CH3-O, from which torsional barriers of 417 cm-1 and 415 cm-1, respectively, could be deduced. Rotational constants obtained from geometry optimizations at various levels of theory were compared to the experimental values, confirming the soft degree of freedom of the (C=O)-C bond observed for the C1 conformer of shorter methyl alkynoates like methyl butyrate and methyl valerate. Comparison of the barriers to methyl internal rotation of methyl hexanoate to those of other CH3-O-(C=O)-R molecules leads to the conclusion that though the barrier height is relatively constant at about 420 cm-1, it decreases in molecules with longer R.Entities:
Keywords: internal rotation; large amplitude motion; microwave spectroscopy; rotational spectroscopy
Mesh:
Substances:
Year: 2022 PMID: 35565991 PMCID: PMC9105109 DOI: 10.3390/molecules27092639
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.927
Figure 1The two observed conformers Cs (left hand side) and C1 (right hand side) of MHO optimized at the MP2/6-311++G(d,p) and MP2/cc-pVDZ levels of theory. Atom numbering is given at the Cs conformer. Grey atoms are carbon, white atoms are hydrogen and the red ones are oxygen. Upper trace: View on the O–(CO)–C plane; lower trace: view along the O2=C1 bond.
Rotational constants (in MHz), dipole moment components (in Debye), dihedral angles (in degree), and energies relative to that of the lowest energy conformer I (E = −424.5296788 Hartree) of the two observed conformers of MHO (I and XIII) calculated at the MP2/6-311++G(d,p) level of theory.
| Conf. |
|
|
|
|
|
| ϑ1 | ϑ2 | ϑ3 | ϑ4 |
|
|---|---|---|---|---|---|---|---|---|---|---|---|
| I | 3101.3 | 664.2 | 616.4 | –0.37 | 0.33 | –1.62 | –146.54 | 66.52 | 179.98 | 179.95 | 0.00 |
| I a | 3598.9 | 626.6 | 584.6 | –0.83 | 0.58 | –9.11 | –166.18 | 69.11 | 179.53 | 179.90 | |
| XIII | 6990.7 | 483.4 | 459.9 | 0.07 | –1.72 | 0.00 | 180.00 | 180.00 | 180.00 | 180.00 | 3.25 |
| Exp. b | 3599.0 | 625.4 | 585.8 |
a Values calculated at the MP2/cc-pVDZ level of theory for the most stable conformer I (see text). b Experimental values obtained for conformer I. Note the agreement with the values calculated at the MP2/cc-pVDZ level.
Figure 2The survey spectrum of MHO recorded from 11,000 MHz to 15,500 MHz. A portion of the scan from 11,360 MHz to 11,440 MHz is illustrated in an enlarged scale where assigned lines are labeled with their corresponding quantum numbers J, K, K and torsional species (A or E). They all belong to conformer I. The intensities are in arbitrary units and a logarithmic scale.
Figure 3A high-resolution measurement of the 918 ← 817 transition of conformer I of MHO. The polarization frequency is 11,066 MHz for this spectrum, and 96 free induction decays were co-added.
Molecular parameters of the two assigned conformers I (C1) and XIII (Cs) of MHO obtained from a fit with the program XIAM.
| Par. a | Unit | I = C1 | XIII = Cs |
|---|---|---|---|
|
| MHz | 3599.03841(24) | 6987.3630(32) |
|
| MHz | 625.35951(20) | 483.652(15) |
|
| MHz | 585.83319(20) | 460.364(16) |
|
Δ | kHz | 0.17529(66) | 0.0393(91) |
|
Δ | kHz | −4.7630(45) | |
|
Δ | kHz | 45.278(21) | 6.13(65) |
|
| kHz | 0.01954(32) | 0.0027(11) |
|
| kHz | −0.824(82) | 27.8(76) |
| cm−1 | 415.15(13) | 416.890(96) | |
| ∠( | ° | 134.280(79) | 158.82(12) |
| ∠( | ° | 133.80(40) | 68.82(12) |
| ∠( | ° | 79.46(95) | 90.0 c |
|
| 100/80 | 21/21 | |
|
| kHz | 4.0 | 4.4 |
a All parameters refer to the principal axis system. Watson’s A reduction in Ir representation was used. The errors in parentheses are in the unit of the last significant digits. b The V3 parameter is correlated to the moment of inertia F0 of the methyl rotor. Therefore, F0 was fixed to 158 GHz in both fits, a value often found for methyl groups and also used in Refs. [17,18], corresponding to a moment of inertia of Iα = 3.2 uÅ2. c Fixed due to symmetry. d Number of the A (NA) and E species lines (NE). e Standard deviation of the fit.
Figure 4The most stable conformer I of (a) methyl butyrate, (b) methyl valerate, and (c) methyl hexanoate optimized at the MP2/6-311++G(d,p) level of theory. For atom colors, see Figure 1.
A collection of methyl alkynoates and their respective torsional barriers of the methoxy methyl group (in cm−1).
| Molecule | Cs Conformer | C1 Conformer |
|---|---|---|
| Methyl acetate [ | 424.581(56) | |
| Methyl propionate [ | 422.801(22) a | |
| Methyl butyrate [ | 420.155(71) | 419.447(59) |
| Methyl valerate [ | 418.059(27) | 417.724(70) |
| Methyl hexanoate b | 416.890(96) | 415.15(13) |
a The data set was refitted with the moment of inertia F0 fixed to 158 GHz for a reasonable comparision with other molecules. Therefore, the value differs from that of 429.324(23) cm−1 given in Ref. [16] where F0 was fixed to 160 GHz. b This work.