Literature DB >> 35554898

Molecular Epidemiology of SARS-CoV-2 by Sequencing.

Yan Yan1, Qinxue Hu2,3.   

Abstract

Sequences of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) contains preliminary information on the phylodynamics and phylogeography of this new virus. A maximum clade credibility tree (MCCT) was constructed using available whole genome sequences of SARS-CoV-2 and highly similar whole genome sequences from bat SARS-like coronavirus, which are available in GenBank. In this chapter, we describe the molecular epidemiology of SARS-CoV-2 by sequencing the viral genomes from confirmed COVID-19 patients, utilizing methods such as target fragment amplification, sequencing, alignment, and maximum similarity mapping.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  COVID-19; Genotype; Molecular epidemiology; SARS-CoV-2; Sequencing

Mesh：

Year:  2022        PMID： 35554898     DOI： 10.1007/978-1-0716-2111-0_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  9 in total

1.  Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia.

Authors:  Daniel K W Chu; Yang Pan; Samuel M S Cheng; Kenrie P Y Hui; Pavithra Krishnan; Yingzhi Liu; Daisy Y M Ng; Carrie K C Wan; Peng Yang; Quanyi Wang; Malik Peiris; Leo L M Poon
Journal:  Clin Chem       Date:  2020-04-01       Impact factor: 8.327

2.  The first two cases of 2019-nCoV in Italy: Where they come from?

Authors:  Marta Giovanetti; Domenico Benvenuto; Silvia Angeletti; Massimo Ciccozzi
Journal:  J Med Virol       Date:  2020-02-12       Impact factor: 2.327

3.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

4.  Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Authors:  Jing Lu; Louis du Plessis; Zhe Liu; Verity Hill; Min Kang; Huifang Lin; Jiufeng Sun; Sarah François; Moritz U G Kraemer; Nuno R Faria; John T McCrone; Jinju Peng; Qianling Xiong; Runyu Yuan; Lilian Zeng; Pingping Zhou; Chumin Liang; Lina Yi; Jun Liu; Jianpeng Xiao; Jianxiong Hu; Tao Liu; Wenjun Ma; Wei Li; Juan Su; Huanying Zheng; Bo Peng; Shisong Fang; Wenzhe Su; Kuibiao Li; Ruilin Sun; Ru Bai; Xi Tang; Minfeng Liang; Josh Quick; Tie Song; Andrew Rambaut; Nick Loman; Jayna Raghwani; Oliver G Pybus; Changwen Ke
Journal:  Cell       Date:  2020-04-30       Impact factor: 41.582

5.  Phylogenetic network analysis of SARS-CoV-2 genomes.

Authors:  Peter Forster; Lucy Forster; Colin Renfrew; Michael Forster
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-08       Impact factor: 11.205

6.  The global spread of 2019-nCoV: a molecular evolutionary analysis.

Authors:  Domenico Benvenuto; Marta Giovanetti; Marco Salemi; Mattia Prosperi; Cecilia De Flora; Luiz Carlos Junior Alcantara; Silvia Angeletti; Massimo Ciccozzi
Journal:  Pathog Glob Health       Date:  2020-02-12       Impact factor: 2.894

7.  Characterizing COVID-19 severity, epidemiology and SARS-CoV-2 genotypes in a regional business hub of China.

Authors:  Yan Yan; Bin Liu; Hui Ding; Xu Wang; Yaping Dai; Difei Ding; Hui Yu; Mingchao Sha; Chunyan Lui; Davgadorj Chantsalmaa; Yuanwang Qiu; Lihua Huang; Qinxue Hu
Journal:  J Infect       Date:  2020-08-25       Impact factor: 6.072

8.  The proximal origin of SARS-CoV-2.

Authors:  Kristian G Andersen; Andrew Rambaut; W Ian Lipkin; Edward C Holmes; Robert F Garry
Journal:  Nat Med       Date:  2020-04       Impact factor: 87.241
  9 in total

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