| Literature DB >> 35547802 |
Taylor J Dunning1, Eric Bosch2, Ryan H Groeneman1.
Abstract
The formation and crystal structure of a zigzag mol-ecular network held together by I⋯N halogen bonds is reported. In particular, the halogen-bond donor is 1,2-di-iodo-perchloro-benzene (1,2-C6I2Cl4 ) while the acceptor is a head-to-tail photoproduct, namely rctt-1,3-bis-(pyridin-4-yl)-2,4-di-phenyl-cyclo-butane ( ht -PP). In this co-crystal (1,2-C6I2Cl4 )·( ht-PP), the donor acts as a bent two-connected node while the acceptor behaves as a linear linker to form the extended solid. Neighbouring chains pack in a tongue-and-groove-like pattern that engage in various Cl⋯π inter-actions to both the phenyl and pyridyl rings resulting in a supra-molecular two-dimensional sheet. © Dunning et al. 2022.Entities:
Keywords: [2 + 2] cycloaddition reaction; co-crystal; cyclobutane; halogen bonding; organic solid state; photoproduct
Year: 2022 PMID: 35547802 PMCID: PMC9069512 DOI: 10.1107/S2056989022004200
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The labelled asymmetric unit of (1,2-C)·( -PP). Displacement ellipsoids are drawn at the 50% probability level for non-hydrogen atoms while hydrogen atoms are shown as spheres of arbitrary size.
Figure 2X-ray crystal structure of (1,2-C)·( -PP) illustrating the zigzag network held together by I⋯N halogen bonds. The determined error in all measured angles is 0.1°. Halogen bonds are represented by yellow dashed lines.
Figure 3Space-filling model of (1,2-C)·( -PP) illustrating a closer view of the various Cl⋯π interactions.
Figure 4Hirshfeld surface of (1,2-C)·( -PP) mapped over d norm illustrating the I⋯N halogen bonds and Cl⋯π interactions.
Experimental details
| Crystal data | |
| Chemical formula | C26H22N2·C6Cl4I2 |
|
| 830.11 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 9.6519 (6), 28.3120 (16), 11.1909 (6) |
| β (°) | 92.154 (1) |
|
| 3055.9 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 2.43 |
| Crystal size (mm) | 0.55 × 0.23 × 0.17 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.690, 0.746 |
| No. of measured, independent and observed [ | 39572, 6730, 6601 |
|
| 0.024 |
| (sin θ/λ)max (Å−1) | 0.641 |
| Refinement | |
|
| 0.056, 0.118, 1.39 |
| No. of reflections | 6730 |
| No. of parameters | 361 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 1.85, −1.11 |
Computer programs: SMART and SAINT (Bruker, 2014 ▸), SHELXT2018/2 (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸) and X-SEED (Barbour, 2020 ▸).
| C26H22N2·C6Cl4I2 | |
| Monoclinic, | Mo |
| Cell parameters from 9788 reflections | |
| θ = 2.2–27.1° | |
| µ = 2.43 mm−1 | |
| β = 92.154 (1)° | |
| Cut block, gold | |
| 0.55 × 0.23 × 0.17 mm |
| Bruker APEXII CCD diffractometer | 6730 independent reflections |
| Radiation source: fine-focus sealed tube | 6601 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3660 pixels mm-1 | θmax = 27.1°, θmin = 1.4° |
| phi and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | |
| 39572 measured reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 6730 reflections | Δρmax = 1.85 e Å−3 |
| 361 parameters | Δρmin = −1.11 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| I1 | 0.42402 (5) | 0.67570 (2) | 0.76670 (4) | 0.01997 (11) | |
| Cl1 | 0.32159 (16) | 0.50027 (5) | 1.01755 (15) | 0.0205 (3) | |
| N1 | 0.4404 (7) | 0.7347 (2) | 0.5659 (5) | 0.0289 (14) | |
| C1 | 0.5615 (9) | 0.7937 (3) | 0.4624 (7) | 0.0366 (19) | |
| H1 | 0.643186 | 0.812241 | 0.457280 | 0.044* | |
| I2 | 0.33844 (4) | 0.55063 (2) | 0.75026 (4) | 0.01986 (11) | |
| Cl2 | 0.36316 (19) | 0.54909 (6) | 1.26078 (14) | 0.0278 (4) | |
| N2 | 0.2232 (7) | 0.9965 (2) | −0.0317 (5) | 0.0284 (14) | |
| C2 | 0.5502 (8) | 0.7620 (3) | 0.5512 (7) | 0.0346 (18) | |
| H2 | 0.626199 | 0.758897 | 0.607178 | 0.041* | |
| Cl3 | 0.45076 (19) | 0.65490 (7) | 1.27684 (15) | 0.0277 (4) | |
| C3 | 0.3349 (8) | 0.7400 (2) | 0.4888 (6) | 0.0265 (15) | |
| H3 | 0.255056 | 0.720864 | 0.497785 | 0.032* | |
| Cl4 | 0.4745 (2) | 0.71377 (6) | 1.04655 (16) | 0.0308 (4) | |
| C4 | 0.3349 (8) | 0.7723 (2) | 0.3944 (6) | 0.0291 (16) | |
| H4 | 0.255937 | 0.775788 | 0.341925 | 0.035* | |
| C5 | 0.4541 (9) | 0.7993 (2) | 0.3794 (6) | 0.0290 (16) | |
| C6 | 0.4776 (8) | 0.8351 (3) | 0.2821 (7) | 0.0307 (16) | |
| H6 | 0.575422 | 0.833443 | 0.255902 | 0.037* | |
| C7 | 0.3761 (9) | 0.8370 (3) | 0.1726 (7) | 0.0319 (17) | |
| H7 | 0.307057 | 0.810670 | 0.173423 | 0.038* | |
| C8 | 0.4407 (9) | 0.8410 (3) | 0.0559 (7) | 0.0328 (18) | |
| C9 | 0.3756 (10) | 0.8186 (3) | −0.0507 (9) | 0.041 (2) | |
| H9 | 0.289941 | 0.802314 | −0.045522 | 0.049* | |
| C10 | 0.4405 (12) | 0.8214 (3) | −0.1583 (7) | 0.045 (2) | |
| H10 | 0.398415 | 0.806288 | −0.226264 | 0.054* | |
| C11 | 0.5575 (12) | 0.8439 (3) | −0.1709 (9) | 0.052 (3) | |
| H11 | 0.597664 | 0.845191 | −0.247032 | 0.062* | |
| C12 | 0.6206 (11) | 0.8650 (3) | −0.0772 (8) | 0.045 (2) | |
| H12 | 0.704995 | 0.881530 | −0.087581 | 0.054* | |
| C13 | 0.5657 (8) | 0.8634 (2) | 0.0336 (7) | 0.0286 (16) | |
| H13 | 0.615099 | 0.878176 | 0.098356 | 0.034* | |
| C14 | 0.3151 (8) | 0.8844 (3) | 0.2236 (7) | 0.0317 (16) | |
| H14 | 0.229183 | 0.877278 | 0.267459 | 0.038* | |
| C15 | 0.2863 (9) | 0.9255 (3) | 0.1365 (7) | 0.0345 (19) | |
| C16 | 0.1784 (10) | 0.9223 (4) | 0.0598 (11) | 0.063 (3) | |
| H16 | 0.120838 | 0.895069 | 0.060582 | 0.075* | |
| C17 | 0.1494 (10) | 0.9574 (4) | −0.0196 (11) | 0.062 (3) | |
| H17 | 0.069486 | 0.953656 | −0.070986 | 0.074* | |
| C18 | 0.3302 (10) | 1.0006 (3) | 0.0436 (8) | 0.042 (2) | |
| H18 | 0.386524 | 1.028064 | 0.040173 | 0.050* | |
| C19 | 0.3647 (10) | 0.9651 (4) | 0.1307 (8) | 0.050 (3) | |
| H19 | 0.442388 | 0.969243 | 0.184286 | 0.060* | |
| C20 | 0.4378 (7) | 0.8881 (3) | 0.3126 (7) | 0.0258 (15) | |
| H20 | 0.508646 | 0.909802 | 0.279637 | 0.031* | |
| C21 | 0.4104 (9) | 0.9027 (2) | 0.4437 (7) | 0.0294 (16) | |
| C22 | 0.5038 (8) | 0.9328 (2) | 0.5010 (7) | 0.0258 (15) | |
| H22 | 0.578466 | 0.944934 | 0.457292 | 0.031* | |
| C23 | 0.4934 (7) | 0.9460 (3) | 0.6190 (6) | 0.0259 (15) | |
| H23 | 0.560861 | 0.966418 | 0.655345 | 0.031* | |
| C24 | 0.3846 (8) | 0.9296 (3) | 0.6843 (8) | 0.0337 (17) | |
| H24 | 0.375429 | 0.938316 | 0.765629 | 0.040* | |
| C25 | 0.2873 (8) | 0.8993 (3) | 0.6255 (9) | 0.040 (2) | |
| H25 | 0.210484 | 0.887897 | 0.667556 | 0.047* | |
| C26 | 0.3022 (9) | 0.8863 (3) | 0.5083 (8) | 0.0340 (17) | |
| H26 | 0.236364 | 0.865432 | 0.471384 | 0.041* | |
| C27 | 0.4096 (6) | 0.6337 (2) | 0.9214 (6) | 0.0165 (12) | |
| C28 | 0.3769 (6) | 0.5853 (2) | 0.9156 (5) | 0.0142 (11) | |
| C29 | 0.3655 (6) | 0.5593 (2) | 1.0213 (6) | 0.0162 (12) | |
| C30 | 0.3846 (6) | 0.5812 (2) | 1.1325 (6) | 0.0172 (12) | |
| C31 | 0.4211 (6) | 0.6286 (2) | 1.1393 (5) | 0.0168 (12) | |
| C32 | 0.4323 (7) | 0.6547 (2) | 1.0351 (6) | 0.0190 (13) |
| I1 | 0.0268 (2) | 0.01597 (19) | 0.0172 (2) | 0.00231 (16) | 0.00253 (15) | 0.00356 (15) |
| Cl1 | 0.0182 (7) | 0.0156 (7) | 0.0277 (8) | −0.0016 (6) | 0.0019 (6) | 0.0031 (6) |
| N1 | 0.046 (4) | 0.017 (3) | 0.024 (3) | 0.005 (3) | 0.001 (3) | 0.006 (2) |
| C1 | 0.038 (4) | 0.042 (5) | 0.030 (4) | −0.015 (4) | 0.011 (3) | −0.003 (3) |
| I2 | 0.0240 (2) | 0.0190 (2) | 0.0166 (2) | −0.00125 (16) | 0.00060 (15) | −0.00368 (15) |
| Cl2 | 0.0359 (9) | 0.0298 (9) | 0.0178 (7) | 0.0041 (7) | 0.0029 (7) | 0.0089 (6) |
| N2 | 0.039 (4) | 0.029 (3) | 0.017 (3) | 0.012 (3) | 0.004 (3) | 0.008 (2) |
| C2 | 0.030 (4) | 0.038 (4) | 0.036 (4) | 0.008 (3) | −0.001 (3) | 0.000 (3) |
| Cl3 | 0.0316 (9) | 0.0345 (9) | 0.0170 (7) | −0.0033 (7) | 0.0026 (6) | −0.0080 (7) |
| C3 | 0.037 (4) | 0.021 (3) | 0.022 (3) | −0.011 (3) | 0.005 (3) | 0.003 (3) |
| Cl4 | 0.0479 (11) | 0.0180 (8) | 0.0268 (8) | −0.0092 (7) | 0.0075 (8) | −0.0041 (6) |
| C4 | 0.042 (4) | 0.020 (3) | 0.024 (4) | 0.003 (3) | −0.012 (3) | 0.001 (3) |
| C5 | 0.050 (5) | 0.018 (3) | 0.019 (3) | −0.006 (3) | 0.007 (3) | 0.001 (3) |
| C6 | 0.032 (4) | 0.030 (4) | 0.030 (4) | 0.002 (3) | −0.002 (3) | −0.002 (3) |
| C7 | 0.040 (4) | 0.027 (4) | 0.028 (4) | −0.002 (3) | 0.003 (3) | 0.007 (3) |
| C8 | 0.042 (4) | 0.025 (4) | 0.032 (4) | 0.018 (3) | 0.018 (3) | 0.019 (3) |
| C9 | 0.047 (5) | 0.021 (4) | 0.055 (5) | −0.002 (3) | 0.004 (4) | 0.008 (4) |
| C10 | 0.086 (8) | 0.032 (4) | 0.016 (3) | 0.023 (5) | −0.004 (4) | −0.002 (3) |
| C11 | 0.081 (8) | 0.038 (5) | 0.038 (5) | 0.025 (5) | 0.015 (5) | 0.005 (4) |
| C12 | 0.063 (6) | 0.040 (5) | 0.034 (5) | 0.022 (4) | 0.029 (4) | 0.013 (4) |
| C13 | 0.041 (4) | 0.020 (3) | 0.025 (4) | −0.002 (3) | 0.001 (3) | 0.006 (3) |
| C14 | 0.034 (4) | 0.036 (4) | 0.025 (4) | −0.003 (3) | 0.005 (3) | 0.003 (3) |
| C15 | 0.040 (4) | 0.043 (5) | 0.021 (3) | 0.022 (4) | 0.010 (3) | 0.004 (3) |
| C16 | 0.032 (5) | 0.058 (6) | 0.098 (9) | 0.005 (4) | 0.001 (5) | 0.047 (6) |
| C17 | 0.034 (5) | 0.055 (6) | 0.095 (9) | −0.003 (4) | −0.028 (5) | 0.035 (6) |
| C18 | 0.046 (5) | 0.026 (4) | 0.052 (5) | 0.008 (4) | −0.003 (4) | −0.012 (4) |
| C19 | 0.052 (6) | 0.059 (6) | 0.036 (5) | 0.032 (5) | −0.026 (4) | −0.029 (4) |
| C20 | 0.020 (3) | 0.025 (4) | 0.032 (4) | 0.002 (3) | 0.002 (3) | 0.005 (3) |
| C21 | 0.044 (4) | 0.016 (3) | 0.028 (4) | −0.001 (3) | −0.011 (3) | 0.007 (3) |
| C22 | 0.025 (3) | 0.020 (3) | 0.032 (4) | 0.002 (3) | −0.007 (3) | −0.004 (3) |
| C23 | 0.019 (3) | 0.029 (4) | 0.029 (4) | −0.001 (3) | 0.000 (3) | −0.008 (3) |
| C24 | 0.035 (4) | 0.026 (4) | 0.041 (4) | 0.009 (3) | 0.008 (3) | 0.002 (3) |
| C25 | 0.019 (4) | 0.025 (4) | 0.076 (6) | 0.005 (3) | 0.011 (4) | 0.021 (4) |
| C26 | 0.032 (4) | 0.029 (4) | 0.039 (4) | 0.002 (3) | −0.011 (3) | −0.001 (3) |
| C27 | 0.015 (3) | 0.015 (3) | 0.019 (3) | 0.002 (2) | 0.000 (2) | 0.002 (2) |
| C28 | 0.010 (3) | 0.018 (3) | 0.015 (3) | 0.003 (2) | 0.000 (2) | −0.002 (2) |
| C29 | 0.011 (3) | 0.017 (3) | 0.021 (3) | −0.001 (2) | −0.001 (2) | 0.000 (2) |
| C30 | 0.013 (3) | 0.021 (3) | 0.018 (3) | 0.004 (2) | 0.002 (2) | 0.003 (2) |
| C31 | 0.014 (3) | 0.023 (3) | 0.014 (3) | 0.000 (2) | −0.001 (2) | −0.003 (2) |
| C32 | 0.022 (3) | 0.016 (3) | 0.019 (3) | −0.002 (2) | 0.002 (2) | 0.000 (2) |
| I1—C27 | 2.110 (6) | C12—C13 | 1.367 (11) |
| Cl1—C29 | 1.725 (6) | C12—H12 | 0.9500 |
| N1—C3 | 1.318 (10) | C13—H13 | 0.9500 |
| N1—C2 | 1.327 (11) | C14—C20 | 1.522 (10) |
| C1—C2 | 1.348 (11) | C14—C15 | 1.535 (11) |
| C1—C5 | 1.375 (12) | C14—H14 | 1.0000 |
| C1—H1 | 0.9500 | C15—C16 | 1.328 (14) |
| I2—C28 | 2.115 (6) | C15—C19 | 1.356 (14) |
| Cl2—C30 | 1.718 (6) | C16—C17 | 1.356 (13) |
| N2—C18 | 1.314 (11) | C16—H16 | 0.9500 |
| N2—C17 | 1.327 (12) | C17—H17 | 0.9500 |
| C2—H2 | 0.9500 | C18—C19 | 1.431 (13) |
| Cl3—C31 | 1.725 (6) | C18—H18 | 0.9500 |
| C3—C4 | 1.397 (10) | C19—H19 | 0.9500 |
| C3—H3 | 0.9500 | C20—C21 | 1.556 (11) |
| Cl4—C32 | 1.725 (7) | C20—H20 | 1.0000 |
| C4—C5 | 1.397 (11) | C21—C26 | 1.375 (12) |
| C4—H4 | 0.9500 | C21—C22 | 1.381 (10) |
| C5—C6 | 1.513 (10) | C22—C23 | 1.381 (10) |
| C6—C7 | 1.541 (11) | C22—H22 | 0.9500 |
| C6—C20 | 1.588 (10) | C23—C24 | 1.382 (11) |
| C6—H6 | 1.0000 | C23—H23 | 0.9500 |
| C7—C8 | 1.472 (10) | C24—C25 | 1.415 (12) |
| C7—C14 | 1.583 (11) | C24—H24 | 0.9500 |
| C7—H7 | 1.0000 | C25—C26 | 1.375 (13) |
| C8—C13 | 1.393 (11) | C25—H25 | 0.9500 |
| C8—C9 | 1.472 (13) | C26—H26 | 0.9500 |
| C9—C10 | 1.381 (13) | C27—C28 | 1.406 (9) |
| C9—H9 | 0.9500 | C27—C32 | 1.414 (9) |
| C10—C11 | 1.309 (15) | C28—C29 | 1.400 (9) |
| C10—H10 | 0.9500 | C29—C30 | 1.396 (9) |
| C11—C12 | 1.335 (15) | C30—C31 | 1.389 (9) |
| C11—H11 | 0.9500 | C31—C32 | 1.389 (9) |
| C3—N1—C2 | 117.0 (6) | C19—C15—C14 | 124.7 (8) |
| C2—C1—C5 | 119.6 (8) | C15—C16—C17 | 120.8 (10) |
| C2—C1—H1 | 120.2 | C15—C16—H16 | 119.6 |
| C5—C1—H1 | 120.2 | C17—C16—H16 | 119.6 |
| C18—N2—C17 | 114.8 (7) | N2—C17—C16 | 125.5 (9) |
| N1—C2—C1 | 124.5 (8) | N2—C17—H17 | 117.2 |
| N1—C2—H2 | 117.7 | C16—C17—H17 | 117.2 |
| C1—C2—H2 | 117.7 | N2—C18—C19 | 122.2 (9) |
| N1—C3—C4 | 123.2 (7) | N2—C18—H18 | 118.9 |
| N1—C3—H3 | 118.4 | C19—C18—H18 | 118.9 |
| C4—C3—H3 | 118.4 | C15—C19—C18 | 119.9 (8) |
| C5—C4—C3 | 118.2 (7) | C15—C19—H19 | 120.1 |
| C5—C4—H4 | 120.9 | C18—C19—H19 | 120.1 |
| C3—C4—H4 | 120.9 | C14—C20—C21 | 118.6 (6) |
| C1—C5—C4 | 117.4 (7) | C14—C20—C6 | 89.1 (6) |
| C1—C5—C6 | 115.7 (7) | C21—C20—C6 | 120.3 (6) |
| C4—C5—C6 | 126.9 (7) | C14—C20—H20 | 109.1 |
| C5—C6—C7 | 119.1 (7) | C21—C20—H20 | 109.1 |
| C5—C6—C20 | 115.8 (6) | C6—C20—H20 | 109.1 |
| C7—C6—C20 | 89.3 (6) | C26—C21—C22 | 117.4 (7) |
| C5—C6—H6 | 110.3 | C26—C21—C20 | 124.4 (7) |
| C7—C6—H6 | 110.3 | C22—C21—C20 | 118.1 (7) |
| C20—C6—H6 | 110.3 | C23—C22—C21 | 122.8 (7) |
| C8—C7—C6 | 115.5 (7) | C23—C22—H22 | 118.6 |
| C8—C7—C14 | 115.4 (6) | C21—C22—H22 | 118.6 |
| C6—C7—C14 | 88.6 (6) | C22—C23—C24 | 119.9 (7) |
| C8—C7—H7 | 111.8 | C22—C23—H23 | 120.0 |
| C6—C7—H7 | 111.8 | C24—C23—H23 | 120.0 |
| C14—C7—H7 | 111.8 | C23—C24—C25 | 117.5 (8) |
| C13—C8—C7 | 126.4 (8) | C23—C24—H24 | 121.3 |
| C13—C8—C9 | 113.4 (7) | C25—C24—H24 | 121.3 |
| C7—C8—C9 | 120.2 (8) | C26—C25—C24 | 121.0 (8) |
| C10—C9—C8 | 119.2 (8) | C26—C25—H25 | 119.5 |
| C10—C9—H9 | 120.4 | C24—C25—H25 | 119.5 |
| C8—C9—H9 | 120.4 | C21—C26—C25 | 121.3 (7) |
| C11—C10—C9 | 122.9 (9) | C21—C26—H26 | 119.3 |
| C11—C10—H10 | 118.5 | C25—C26—H26 | 119.3 |
| C9—C10—H10 | 118.5 | C28—C27—C32 | 118.6 (6) |
| C10—C11—C12 | 120.3 (9) | C28—C27—I1 | 122.2 (5) |
| C10—C11—H11 | 119.9 | C32—C27—I1 | 119.2 (5) |
| C12—C11—H11 | 119.9 | C29—C28—C27 | 119.8 (6) |
| C11—C12—C13 | 121.1 (10) | C29—C28—I2 | 118.6 (4) |
| C11—C12—H12 | 119.5 | C27—C28—I2 | 121.6 (4) |
| C13—C12—H12 | 119.5 | C30—C29—C28 | 120.6 (6) |
| C12—C13—C8 | 123.1 (8) | C30—C29—Cl1 | 118.4 (5) |
| C12—C13—H13 | 118.4 | C28—C29—Cl1 | 121.0 (5) |
| C8—C13—H13 | 118.4 | C31—C30—C29 | 120.1 (6) |
| C20—C14—C15 | 118.8 (7) | C31—C30—Cl2 | 120.3 (5) |
| C20—C14—C7 | 90.1 (6) | C29—C30—Cl2 | 119.6 (5) |
| C15—C14—C7 | 118.3 (6) | C30—C31—C32 | 119.8 (6) |
| C20—C14—H14 | 109.4 | C30—C31—Cl3 | 120.0 (5) |
| C15—C14—H14 | 109.4 | C32—C31—Cl3 | 120.2 (5) |
| C7—C14—H14 | 109.4 | C31—C32—C27 | 121.1 (6) |
| C16—C15—C19 | 116.8 (8) | C31—C32—Cl4 | 118.7 (5) |
| C16—C15—C14 | 118.5 (9) | C27—C32—Cl4 | 120.2 (5) |
| H··· | ||||
| C17—H17···Cl2i | 0.95 | 2.69 | 3.632 (10) | 172 |