Giulia Rainoldi1, Giordano Lesma1, Claudia Picozzi2, Leonardo Lo Presti1, Alessandra Silvani1. 1. Dipartimento di Chimica, Università degli Studi di Milano Via Golgi 19 Milano, 20133 Italy alessandra.silvani@unimi.it. 2. Department of Food, Environmental and Nutritional Sciences (DeFENS), Division of Food Microbiology and Bioprocessing Via Celoria 2 20133 Milan Italy.
The β-lactam fragment constitutes a part of various naturally occurring compounds, a number of which exhibit pronounced biological activity. Despite many decades of clinical significance from the discovery of penicillin forward, it remains an interesting pharmacophore for medicinal chemistry and novel applications of β-lactam derivatives continue to be developed.[1] On the other hand, 3-substituted-3-amino-2-oxindoles are also recurring core structures, that can be found in drug molecules and biologically active compounds acting on different targets[2] (Fig. 1). Since the manifold biological activities of 3-substituted-3-amino-2-oxindoles are strongly influenced by the type of substitution at C3 position, the rapid construction of such privileged compounds, displaying complex and varied architectures, is a valuable way to contribute to drug discovery.[3]
Fig. 1
Examples of biologically relevant compounds containing β-lactam or 3-substituted-3-amino-2-oxindole fragments.
As part of our interest in the synthesis of aminooxindoles and related spiro-compounds,[4] we recently turned our attention to the molecular hybridization concept, a viable and effective approach envisioning the rational design of new functional compounds through the structural fusion of two pharmacophoric subunits from known structures into one chemical entity. Until now, several new chemical classes have been discovered by the combination of pharmacophoric moieties of known molecules, resulting often in novel and more potent hybrid derivatives.[5] As, to the best of our knowledge, no methods have been reported for the preparation of oxindoles bearing a N-jointed β-lactam ring at the key C3 position, we envisioned the first construction of such hybrid molecules, selecting in particular, a peptidomimetic scaffold as the privileged target. New peptidomimetic small molecules are indeed desirable, particularly in the highly challenging fields of protein–protein interactions targeting and of antimicrobial drug discovery research.[6] Among strategies to the β-lactam ring, Staudinger reaction involving [2 + 2] cycloaddition of ketenes and imines has been the most widely used protocol.[7] Considering a multicomponent approach more suitable for the rapid generation of peptidomimetic backbones containing the β-lactam ring, we looked at the Ugi four-center three-component reaction (Ugi-4C-3CR),[8] using easily accessible β-amino acids, isocyanides and isatins. Apart a single example reported,[9] this is the first wide application of such reaction involving a ketone as the carbonyl component and following the complete Ugi pathway, including the final rearrangement, leading to β-lactam derivatives.Herein, we report the high yield, single step synthesis of a variety of oxindole-based β-lactams, bearing a peptidomimetic backbone, some their post-transformations and they evaluation according to the Lipinski rule of five and against a set of bacterial strains.
Results and discussion
Initially, N-Bn isatin 1a, tert-butyl isocyanide 2a and β-alanine 3a were selected to optimize the conditions for the Ugi-4C-3CR (Table 1). We started our investigation considering aprotic solvents such as dichloromethane and toluene (entries 1–2), but the reaction was found to be sluggish. Working in MeOH (entry 3), the same reaction afforded the desired β-lactam 4a in low yield. When we switched to the more acidic trifluoroethanol (TFE), following our recent achievements in different Ugi-type reactions,[10] both the reaction rate and yield definitely increased (entries 4–6). With satisfactory conditions in hand, a variety of substituted isatins 1a–j were next explored to investigate the carbonyl component scope of the Ugi-4C-3CR (Scheme 1). Working with tert-butyl isocyanide (2a) and β-alanine 3a, the protecting group on the oxindole nitrogen atom was found to have a moderate influence on the reaction, with compounds 4a–f obtained in substantial yields, up to 97%.
Optimization of the reaction conditionsa
Entry
Solvent
Conc. [M]
Time [h]
Yieldb (%)
1
CH2Cl2
0.25
24
<5
2
Toluene
0.25
24
<5
3
MeOH
0.25
18
15
4
TFE
0.25
6
61
5
TFE
0.5
6
95
6
TFE
1.0
6
87
Reactions were performed on a 0.3 mmol scale, with 1a : 2a : 3a in a 1 : 1 : 1 ratio, at room temperature.
Isolated yields.
Scheme 1
Components scope of the Ugi-4C-3CR. Reaction conditions: isatin 1 (0.5 mmol), isocyanide 2 (0.5 mmol) and β-amino acid 3 (0.5 mmol) in TFE (1 mL), stirred at room temperature. Isolated yields are reported. PBB = p-bromobenzyl, PNB = p-nitrobenzyl.
Reactions were performed on a 0.3 mmol scale, with 1a : 2a : 3a in a 1 : 1 : 1 ratio, at room temperature.Isolated yields.Next, N-benzyl-isatins bearing various substituents on the aromatic ring were explored. Good yields of the corresponding β-lactams derivatives were obtained in the presence of a variety of substituents, including electron-donating group (4g) and halogen substituents at either the 5- or 6-position (4h and 4j), whereas the reaction proved to be moderately inhibited when a strongly electron-withdrawing group was present (4i).Investigation of the isocyanide component (2a–e) scope was also conducted. Expected β-lactams 4k–n were readily obtained, both with aliphatic and heteroaromatic isocyanides, although in a generally bit lower yield.Finally, two enantiomerically pure β-amino acids, namely (S)-3-amino-3-phenylpropanoic acid and (S)-3-amino-4-methoxy-4-oxobutanoic acid (3b, c), were tested in the reaction. Compounds 4o and 4p were easily obtained as mixtures of enantiomerically pure β-lactams diastereoisomers.Chromatographic separation on compound 4o allowed to obtain crystals of diastereoisomers 4oa and 4ob, suitable for determination of relative (and absolute) stereochemistry. By means of X-ray analysis of the major diasteroisomer 4oa, given the fixed S configuration at the β-lactam stereocenter, the configuration at the oxindole ring stereocenter was found to be S (Fig. 2; see ESI† for full crystallographic details). Considering the quite similar chemical shifts trend in NMR spectra of 4o and 4p, the same S,S-configuration could be conceivably assigned also to the 4p major diastereoisomer. Having established the scope of the method, some post-transformations were performed on selected derivatives (Scheme 2). The reaction of β-lactam 4a with methyl iodide under basic conditions gave the alkylated amide 5 in high yield. Aiming to obtain the double functionalization on both the NH and at the α-position on the lactam moiety, compound 4a was also treated with two equivalents of LDA followed by the addition of allyl bromide.
Fig. 2
ORTEP view of compound 4oa with the atom-numbering scheme. The crystallographic reference system is also highlighted. Thermal ellipsoids of non-H atoms at RT were drawn at the 30% probability level.
Scheme 2
Post-transformation reactions performed on selected compounds.
However, in this condition, only the unprecedented product 6 was obtained in good yield, likely deriving from a retro-condensation process, followed by irreversible allylation. This outcome discloses an effective deacylative alkylation strategy,[11] that could be useful for the construction of a variety of 3,3-disubstituted 2-oxindoles. A proposed mechanism for this reaction is reported in Scheme 3. Finally, starting from compound 4l, the secondary amido group was easily dealkylated under acid conditions to give the primary amide 7 in quantitative yield, fully demonstrating the high versatility of 2-isocyano-2,4,4-trimethylpentane as cleavable isocyanide. To evaluate the suitability of the obtained compounds in drug discovery programs, their physicochemical properties have been calculated using DruLiTo[12] (calculation details are provided in the ESI†). All compounds proved to be drug-like according to the rule of five (Ro5) proposed by Lipinski, having a calculated octanol/water partition (log P) lower than 3, therefore positioning themselves in the highly hydrophilic area (Fig. 3). Regarding the other Ro5 properties, all the synthesized compounds have hydrogen bonding donator groups (HBD) lower than five and hydrogen bonding acceptor groups (HBA) lower than ten (Fig. 4). Further, the presence of rotational bonds (RB) lower than ten and the polar surface area prediction (TPSA) lower than 140 Å2 (see ESI†) show that all compounds also meet the more recent Veber's rule[13] on good oral bioavailability, making them definitively of potential interest from the pharmacological point of view.
Scheme 3
Proposed mechanism for compound 6.
Fig. 3
Drug- and lead-likeness (MW/log P) of all the products obtained in this work. Blue-spots: β-lactams derivatives 4a–p. Red-spots: post-transformation derivatives 5–7.
Fig. 4
Calculated hydrogen bonding donators (HBD, blue-bars), hydrogen bonding acceptors (HBA, red-bars), and rotational bonds (RB, greenbars) for all the synthesized compounds.
Lastly, a preliminary biological evaluation was also performed. The antibacterial activity was tested by the disc diffusion method[14] using Gram-negative (Escherichia coli and Pseudomonas aeruginosa) and Gram-positive (Staphylococcus aureus and Streptococcus mutans) bacteria. The results show that one of the synthesised compounds, namely 4e, gives rise to a slight inhibition zone (9.5 ± 0.7 mm) on St. mutans at a concentration of 0.81 mM. None of the other compounds displayed activity at concentrations less than 1 mM.
Conclusions
In conclusion, we have achieved the one-step synthesis of new β-lactam-containing 3,3-disubstituted oxindole derivatives, relying on the Ugi four-center three-component reaction applied to isatin as the oxo component. The reaction conditions were optimized and adopted for a variety of substituted isatins and isocyanides, employing β-alanine or chiral, non racemic, β-amino acids as bifunctional components. Based on their calculated physicochemical properties, all compounds are eligible for being drug-like and therefore potentially suitable in drug discovery programs. Preliminary evaluation against selected bacterial strains highlighted compound 4e as the more promising for future tuning of functional groups on the β-lactam-oxindole scaffold.
Experimental
General
All commercial materials (Aldrich, Fluka) were used without further purification. All solvents were of reagent grade or HPLC grade. All reactions were carried out under a nitrogen atmosphere unless otherwise noted. All reactions were monitored by thin layer chromatography (TLC) on precoated silica gel 60 F254; spots were visualized with UV light or by treatment with suitable TLC visualization reagents. Products were purified by flash chromatography (FC) on silica gel 60 (230–400 mesh). 1H NMR spectra and 13C NMR spectra were recorded on 300 and 400 MHz spectrometers. Chemical shifts are reported in parts per million relative to the residual solvent. 13C NMR spectra have been recorded using the APT pulse sequence. Multiplicities in 1H NMR are reported as follows: s = singlet, d = doublet, t = triplet, m = multiplet, br s = broad singlet. High-resolution MS spectra were recorded with a LCQ Fleet ion trap mass spectrometer, equipped with an ESI source. All the N-substituted isatins were synthesized according to reported literature.[15]
General procedure for the Ugi-4C-3CR
To a solution of isatin (0.5 mmol) and β-amino acid (0.5 mmol) in TFE (1 mL), isocyanide (0.5 mmol) was added. The mixture was stirred at room temperature and the conversion was monitored by TLC. The solvent was evaporated in vacuo and the crude was purified by flash chromatography (FC) as reported below.
To a solution of compound 4a (0.30 mmol) in anhydrous dimethylformamide (1 mL), Cs2CO3 (0.35 mmol) was added and the mixture was stirred for 1 h at room temperature. Then, methyl iodide (0.40 mmol) was slowly added, and the mixture was stirred overnight. After the completion of the reaction (monitored by TLC), saturated aq. NaCl was added. The reaction mixture was extracted with EtOAc twice, then the combined organic layers were washed with water, followed by brine. The organic phase was dried over anhydrous Na2SO4 and concentrated in vacuo. The crude was purified by FC (hexane : EtOAc, from 1.5 : 1 to 1 : 1.5) affording the desired product 5 (86% yield) as a yellow foamy solid; 1H NMR (400 MHz, CDCl3) δ 7.44 (d, J = 7.3 Hz, 1H), 7.39–7.26 (m, 5H), 7.22 (t, J = 7.5 Hz, 1H), 7.08 (t, J = 7.5 Hz, 1H), 6.73 (d, J = 7.8 Hz, 1H), 4.99 (d, J = 15.8 Hz, 1H), 4.90 (d, J = 15.7 Hz, 1H), 3.35 (m, br, 1H), 3.28–3.12 (m, 6H), 1.33 (s, 9H); 13C NMR (101 MHz, CDCl3) δ 172.6, 168.0, 163.3, 142.3, 136.1, 130.0, 129.6 (2C), 128.4, 127.9 (2C), 127.5, 124.5, 124.0, 110.4, 69.8, 57.0, 44.6, 38.3, 36.8, 30.4 (3C), 22.4; HRMS (ESI) calcd for C24H27N3NaO3+ [MNa]+ 428.1945, found 428.1940.
Compound 4l (0.1 mmol) was dissolved in TFA (0.5 mL) and stirred overnight at room temperature. The mixture was diluted in EtOAc and washed with water and then brine. The solvent was dried over anhydrous Na2SO4 and the solvent evaporated under reduced pressure affording product 7 (99% yield). Yellow foamy solid; 1H NMR (400 MHz, CDCl3) δ 7.83 (d, J = 7.2 Hz, 1H), 7.47 (t, J = 7.2 Hz, 1H), 7.43–7.18 (m, 7H), 7.01 (d, J = 7.2 Hz, 1H), 5.61 (br s, 1H), 5.20 (d, J = 15.3 Hz, 1H), 4.73 (d, J = 15.3 Hz, 1H), 3.20–3.07 (m, 1H), 3.07–2.87 (m, 2H), 2.85–2.69 (m, 1H); 13C NMR (101 MHz, CDCl3) δ 176.0, 169.4, 162.0, 144.4, 135.2, 133.3, 129.9 (2C), 129.2, 128.4 (2C), 127.4, 125.8, 120.0, 111.8, 57.8, 53.6, 45.4, 40.7; HRMS (ESI) calcd for C19H17N3NaO3+ [MNa]+ 358.1162, found 358.1160.
Antibacterial activity
The antibacterial activity was evaluated by the disc diffusion method[12] using Gram-negative (Escherichia coli ATCC25922 and Pseudomonas aeruginosa DSM22644) and Gram-positive (Staphylococcus aureus ATCC25923 and Streptococcus mutans ATCC35668) bacteria. Several morphologically similar colonies for each microorganism, grown overnight at 37 °C or 30 °C (P. aeruginosa) on Tryptic Soy Agar (TSA, Scharlab, Barcelona, Spain), were selected and suspended in sterile saline solution (0.85% NaCl w/v) to a turbidity of 0.5 McFarland standard, approximately corresponding to 1–2 × 108 CFU mL−1. Each bacterial suspension was then spread over Mueller–Hinton Agar (MHA, Merck KGaA, Darmstadt, Germany) plates by swabbing in three directions. Solutions were prepared in an initial concentration of approximately 500 μg mL−1 and then serially diluted two-fold for three times. Sterile discs (6 mm diameter) were then placed on agar plates and loaded with 50 μl of each dilution. After incubation at 37 °C or 30 °C for 18–24 h, plates were checked to evaluate the presence of inhibition zones.
Authors: Ke Ding; Yipin Lu; Zaneta Nikolovska-Coleska; Guoping Wang; Su Qiu; Sanjeev Shangary; Wei Gao; Dongguang Qin; Jeanne Stuckey; Krzysztof Krajewski; Peter P Roller; Shaomeng Wang Journal: J Med Chem Date: 2006-06-15 Impact factor: 7.446
Authors: Daniel F Veber; Stephen R Johnson; Hung-Yuan Cheng; Brian R Smith; Keith W Ward; Kenneth D Kopple Journal: J Med Chem Date: 2002-06-06 Impact factor: 7.446