Literature DB >> 35545713

NeuroMechFly, a neuromechanical model of adult Drosophila melanogaster.

Shravan Tata Ramalingasetty1, Pembe Gizem Özdil2,1, Victor Lobato-Rios2, Jonathan Arreguit1, Auke Jan Ijspeert1, Pavan Ramdya3.   

Abstract

Animal behavior emerges from an interaction between neural network dynamics, musculoskeletal properties and the physical environment. Accessing and understanding the interplay between these elements requires the development of integrative and morphologically realistic neuromechanical simulations. Here we present NeuroMechFly, a data-driven model of the widely studied organism, Drosophila melanogaster. NeuroMechFly combines four independent computational modules: a physics-based simulation environment, a biomechanical exoskeleton, muscle models and neural network controllers. To enable use cases, we first define the minimum degrees of freedom of the leg from real three-dimensional kinematic measurements during walking and grooming. Then, we show how, by replaying these behaviors in the simulator, one can predict otherwise unmeasured torques and contact forces. Finally, we leverage NeuroMechFly's full neuromechanical capacity to discover neural networks and muscle parameters that drive locomotor gaits optimized for speed and stability. Thus, NeuroMechFly can increase our understanding of how behaviors emerge from interactions between complex neuromechanical systems and their physical surroundings.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35545713     DOI: 10.1038/s41592-022-01466-7

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  66 in total

Review 1.  A framework for models of biological behaviour.

Authors:  B Webb
Journal:  Int J Neural Syst       Date:  1999-10       Impact factor: 5.866

2.  A connectionist central pattern generator for the aquatic and terrestrial gaits of a simulated salamander.

Authors:  A J Ijspeert
Journal:  Biol Cybern       Date:  2001-05       Impact factor: 2.086

Review 3.  Assessing sensory function in locomotor systems using neuro-mechanical simulations.

Authors:  Keir Pearson; Orjan Ekeberg; Ansgar Büschges
Journal:  Trends Neurosci       Date:  2006-09-07       Impact factor: 13.837

4.  Dynamic simulation of insect walking.

Authors:  Orjan Ekeberg; Marcus Blümel; Ansgar Büschges
Journal:  Arthropod Struct Dev       Date:  2004-07       Impact factor: 2.010

Review 5.  Analysis and modeling of the locomotor central pattern generator as a network of coupled oscillators.

Authors:  K A Sigvardt; W L Miller
Journal:  Ann N Y Acad Sci       Date:  1998-11-16       Impact factor: 5.691

Review 6.  Modeling of the spinal neuronal circuitry underlying locomotion in a lower vertebrate.

Authors:  A Lansner; J H Kotaleski; S Grillner
Journal:  Ann N Y Acad Sci       Date:  1998-11-16       Impact factor: 5.691

Review 7.  The brain has a body: adaptive behavior emerges from interactions of nervous system, body and environment.

Authors:  H J Chiel; R D Beer
Journal:  Trends Neurosci       Date:  1997-12       Impact factor: 13.837

Review 8.  The Scientific Case for Brain Simulations.

Authors:  Gaute T Einevoll; Alain Destexhe; Markus Diesmann; Sonja Grün; Viktor Jirsa; Marc de Kamps; Michele Migliore; Torbjørn V Ness; Hans E Plesser; Felix Schürmann
Journal:  Neuron       Date:  2019-05-22       Impact factor: 17.173

Review 9.  Organization of the Mammalian Locomotor CPG: Review of Computational Model and Circuit Architectures Based on Genetically Identified Spinal Interneurons(1,2,3).

Authors:  Ilya A Rybak; Kimberly J Dougherty; Natalia A Shevtsova
Journal:  eNeuro       Date:  2015-09-22

10.  OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement.

Authors:  Ajay Seth; Jennifer L Hicks; Thomas K Uchida; Ayman Habib; Christopher L Dembia; James J Dunne; Carmichael F Ong; Matthew S DeMers; Apoorva Rajagopal; Matthew Millard; Samuel R Hamner; Edith M Arnold; Jennifer R Yong; Shrinidhi K Lakshmikanth; Michael A Sherman; Joy P Ku; Scott L Delp
Journal:  PLoS Comput Biol       Date:  2018-07-26       Impact factor: 4.475

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