Literature DB >> 35540941

Open-Ended Inquiry into Zebrafish Nerve Development Using Image Analysis.

Sarah C Petersen1.   

Abstract

Open-ended laboratory projects increase student success and retention in the sciences. However, developing organismal-based research projects is a challenge for students with restricted laboratory access, such as those attending courses remotely. Here I describe the use of image analysis of zebrafish neural development for authentic research projects in an introductory biology laboratory course. Zebrafish are a vertebrate model that produce large numbers of externally and rapidly developing embryos. Because zebrafish larvae are transparent, fluorescent reporters marking nervous system structures can be imaged over time and analyzed by undergraduate scientists. In the pilot of this project, remote first-year college students independently developed biological questions based on an image collection comparing zebrafish mutants and wild-type siblings. Students created and mastered techniques to analyze position, organization, and other morphological features of developing neurons and glia in the images to directly test their biological questions. At the end of the course, students communicated their project results in journal article format and oral presentations. Students were able to hone skills in organismal observation and data collection while studying remotely, and they reported excitement at applying lecture-based knowledge to their own independent questions. This module can be adapted by other instructors for both students on- and off-campus to teach principles of neural development, data collection, data analysis, and scientific communication.
Copyright © 2021 Faculty for Undergraduate Neuroscience.

Entities:  

Keywords:  Fiji; ImageJ; authentic inquiry; first-year research; image analysis; lateral line; motor nerves; neuroanatomy; neurodevelopment; open-ended laboratory; remote learning; sensory nerves; zebrafish

Year:  2021        PMID: 35540941      PMCID: PMC9053433     

Source DB:  PubMed          Journal:  J Undergrad Neurosci Educ        ISSN: 1544-2896


  30 in total

Review 1.  In vivo drug discovery in the zebrafish.

Authors:  Leonard I Zon; Randall T Peterson
Journal:  Nat Rev Drug Discov       Date:  2005-01       Impact factor: 84.694

2.  CNS-derived glia ensheath peripheral nerves and mediate motor root development.

Authors:  Sarah Kucenas; Norio Takada; Hae-Chul Park; Elvin Woodruff; Kendal Broadie; Bruce Appel
Journal:  Nat Neurosci       Date:  2008-01-06       Impact factor: 24.884

3.  Modulating the Zebrafish Camouflage Response Pathway to Illustrate Neuroendocrine Control Over a Robust and Quantifiable Behavior.

Authors:  Brooke A Prakash; Cecilia Phillips Toro
Journal:  J Undergrad Neurosci Educ       Date:  2019-12-21

4.  Identified motoneurons and their innervation of axial muscles in the zebrafish.

Authors:  M Westerfield; J V McMurray; J S Eisen
Journal:  J Neurosci       Date:  1986-08       Impact factor: 6.167

5.  Versatile Undergraduate Neurobiology Course-Based Research Experiences Using Open Access 3D Electron Microscopy Image Volumes.

Authors:  Marc Nahmani
Journal:  J Undergrad Neurosci Educ       Date:  2019-12-21

6.  Zebrafish foxc1a drives appendage-specific neural circuit development.

Authors:  Santanu Banerjee; Katharina Hayer; John B Hogenesch; Michael Granato
Journal:  Development       Date:  2015-02-15       Impact factor: 6.868

Review 7.  Alcohol exposure during embryonic development: An opportunity to conduct systematic developmental time course analyses in zebrafish.

Authors:  Amanda Facciol; Benjamin Tsang; Robert Gerlai
Journal:  Neurosci Biobehav Rev       Date:  2019-01-11       Impact factor: 8.989

8.  Analysis of zebrafish sidetracked mutants reveals a novel role for Plexin A3 in intraspinal motor axon guidance.

Authors:  Kelly A Palaisa; Michael Granato
Journal:  Development       Date:  2007-08-15       Impact factor: 6.868

9.  Contact-mediated inhibition between oligodendrocyte progenitor cells and motor exit point glia establishes the spinal cord transition zone.

Authors:  Cody J Smith; Angela D Morris; Taylor G Welsh; Sarah Kucenas
Journal:  PLoS Biol       Date:  2014-09-30       Impact factor: 8.029

10.  Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools.

Authors:  Dominique Förster; Irene Arnold-Ammer; Eva Laurell; Alison J Barker; António M Fernandes; Karin Finger-Baier; Alessandro Filosa; Thomas O Helmbrecht; Yvonne Kölsch; Enrico Kühn; Estuardo Robles; Krasimir Slanchev; Tod R Thiele; Herwig Baier; Fumi Kubo
Journal:  Sci Rep       Date:  2017-07-12       Impact factor: 4.379

View more
  1 in total

1.  Continued Challenges for Neuroscience Education During the COVID-19 Pandemic.

Authors:  Raddy L Ramos
Journal:  J Undergrad Neurosci Educ       Date:  2021-12-24
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.