Literature DB >> 35528964

Classifying Cyber-Risky Clinical Notes by Employing Natural Language Processing.

Suzanna Schmeelk1, Martins Samuel Dogo2, Yifan Peng3, Braja Gopal Patra3.   

Abstract

Clinical notes, which can be embedded into electronic medical records, document patient care delivery and summarize interactions between healthcare providers and patients. These clinical notes directly inform patient care and can also indirectly inform research and quality/safety metrics, among other indirect metrics. Recently, some states within the United States of America require patients to have open access to their clinical notes to improve the exchange of patient information for patient care. Thus, developing methods to assess the cyber risks of clinical notes before sharing and exchanging data is critical. While existing natural language processing techniques are geared to de-identify clinical notes, to the best of our knowledge, few have focused on classifying sensitive-information risk, which is a fundamental step toward developing effective, widespread protection of patient health information. To bridge this gap, this research investigates methods for identifying security/privacy risks within clinical notes. The classification either can be used upstream to identify areas within notes that likely contain sensitive information or downstream to improve the identification of clinical notes that have not been entirely de-identified. We develop several models using unigram and word2vec features with different classifiers to categorize sentence risk. Experiments on i2b2 de-identification dataset show that the SVM classifier using word2vec features obtained a maximum F1-score of 0.792. Future research involves articulation and differentiation of risk in terms of different global regulatory requirements.

Entities:  

Year:  2022        PMID: 35528964      PMCID: PMC9076271          DOI: 10.24251/hicss.2022.505

Source DB:  PubMed          Journal:  Proc Annu Hawaii Int Conf Syst Sci        ISSN: 1530-1605


  13 in total

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Authors:  Joan M Kiel
Journal:  J Contemp Health Law Policy       Date:  2004

2.  Inductive creation of an annotation schema and a reference standard for de-identification of VA electronic clinical notes.

Authors:  Jeanmarie Mayer; Shuying Shen; Brett R South; Stephane Meystre; F Jeff Friedlin; William R Ray; Matthew Samore
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

3.  CRFs based de-identification of medical records.

Authors:  Bin He; Yi Guan; Jianyi Cheng; Keting Cen; Wenlan Hua
Journal:  J Biomed Inform       Date:  2015-08-24       Impact factor: 6.317

4.  Evaluating the state-of-the-art in automatic de-identification.

Authors:  Ozlem Uzuner; Yuan Luo; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2007-06-28       Impact factor: 4.497

5.  Building gold standard corpora for medical natural language processing tasks.

Authors:  Louise Deleger; Qi Li; Todd Lingren; Megan Kaiser; Katalin Molnar; Laura Stoutenborough; Michal Kouril; Keith Marsolo; Imre Solti
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

6.  Text de-identification for privacy protection: a study of its impact on clinical text information content.

Authors:  Stéphane M Meystre; Óscar Ferrández; F Jeffrey Friedlin; Brett R South; Shuying Shen; Matthew H Samore
Journal:  J Biomed Inform       Date:  2014-02-03       Impact factor: 6.317

7.  A cascaded approach for Chinese clinical text de-identification with less annotation effort.

Authors:  Zhe Jian; Xusheng Guo; Shijian Liu; Handong Ma; Shaodian Zhang; Rui Zhang; Jianbo Lei
Journal:  J Biomed Inform       Date:  2017-07-26       Impact factor: 6.317

8.  De-identification of clinical notes via recurrent neural network and conditional random field.

Authors:  Zengjian Liu; Buzhou Tang; Xiaolong Wang; Qingcai Chen
Journal:  J Biomed Inform       Date:  2017-06-01       Impact factor: 6.317

9.  Bootstrapping a de-identification system for narrative patient records: cost-performance tradeoffs.

Authors:  David Hanauer; John Aberdeen; Samuel Bayer; Benjamin Wellner; Cheryl Clark; Kai Zheng; Lynette Hirschman
Journal:  Int J Med Inform       Date:  2013-04-30       Impact factor: 4.046

10.  Entity recognition from clinical texts via recurrent neural network.

Authors:  Zengjian Liu; Ming Yang; Xiaolong Wang; Qingcai Chen; Buzhou Tang; Zhe Wang; Hua Xu
Journal:  BMC Med Inform Decis Mak       Date:  2017-07-05       Impact factor: 2.796

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