| Literature DB >> 35528808 |
Md Fazlul Karim Khan1, Shah Samiur Rashid1, Aizi Nor Mazila Ramli1, Muhammad Nomani Kabir2, Mohammad Nazmul Hasan Maziz3.
Abstract
Background: Diarrhoeagenic verotoxin producing non-O157 Escherichia coli (VTEC) are associated with endemic infantile diarrhoea-causing morbidity and mortality worldwide. VTEC can also cause severe illness and has an impact on outbreaks, especially in developing countries. This study aims to investigate the prevalence and characterisation of VTEC and their association in causing infectious diarrhoea among Malaysian children.Entities:
Keywords: Escherichia coli; Malaysia; children; diarrhoea; non-O157 E. coli
Year: 2022 PMID: 35528808 PMCID: PMC9036922 DOI: 10.21315/mjms2022.29.2.6
Source DB: PubMed Journal: Malays J Med Sci ISSN: 1394-195X
Primers and PCR conditions
| Target gene | Primer sequences | PCR condition | Size bp | Reference |
|---|---|---|---|---|
| VT 1–F | 5′-CAC CAG ACA ATG TAA CCG CTG-3′ | 94 °C for 3 min for one cycle followed by 35 cycles of 94 °C for 1 min, 65 °C for 2 min, 72 °C for 2 min and final extension 1 cycle of 72 °C for 10 min | 348 | ( |
| VT 1–R | 5′-CAG TTA ATG TGG TGG CGA AGG-3′ | |||
| VT 2–F | 5′-GCG TCA TCG TAT ACA CAG GAG C-3′ | 584 | ||
| VT 2–R | 5′-ATC CTA TTC CCG GGA GTT TAC G-3′ |
Figure 1Formation of non-O157 E. coli on CT-SMAC culture plate media
Occurrence of target ‘big 6’ non-O157 serogroups from the clinical isolates of E. coli
| Age (old months) | No. of isolates | O111 | O121 | O145 | O26 | O45 | O103 | |
|---|---|---|---|---|---|---|---|---|
| 0–12 | 53 | 1 | 1 | 0 | 0 | 0 | 1 | < 0.001 |
| 13–24 | 22 | 1 | 1 | 1 | 3 | 1 | 0 | |
| 25–36 | 22 | 3 | 3 | 2 | 2 | 1 | 1 | |
| 37–48 | 25 | 2 | 1 | 2 | 2 | 3 | 3 | |
| 49–60 | 15 | 1 | 3 | 3 | 4 | 1 | 2 | |
|
| ||||||||
| Total | 137 | 8 | 9 | 8 | 11 | 6 | 7 | |
Notes:
Watery stools (n = 25 [18.2 %]);
Mucoid stools (n = 16 [11.6 %]);
Bloody stools (n = 8 [5.8 %])
Clinical features and risk factors among children infected with diarrhoeagenic E. coli pathotypes
| Features/risk factors | No. of isolates | Positive isolates | No. of diarrhoeagenic VTEC pathotypes | ||||
|---|---|---|---|---|---|---|---|
|
| |||||||
| VT1 | VT2 | VT1 and VT2 | |||||
| Age (months old) | 0–5 | 17 | 7 | 6 | 0 | 1 | 0.04 |
| 6–12 | 36 | 5 | 3 | 0 | 2 | ||
| 13–24 | 22 | 8 | 6 | 2 | 0 | ||
| 25–36 | 22 | 5 | 4 | 1 | 0 | ||
| 37–48 | 25 | 2 | 1 | 1 | 0 | ||
| 49–60 | 15 | 2 | 1 | 1 | |||
| Sex | Male | 71 | 10 | 5 | 3 | 2 | 0.03 |
| Female | 66 | 19 | 16 | 2 | 1 | ||
| Symptoms | Vomiting | 25 | 10 | 7 | 2 | 1 | 0.01 |
| Abdominal pain | 32 | 7 | 4 | 2 | 1 | ||
| Nausea | 45 | 10 | 8 | 1 | 1 | ||
| None | 35 | 2 | 8 | 0 | 0 | ||
| Temperature | > 38 °C | 56 | 18 | 13 | 3 | 2 | 0.008 |
| < 38 °C | 81 | 11 | 8 | 2 | 1 | ||
| Feeding type | Breast milk | 76 | 2 | 1 | 1 | 0 | < 0.001 |
| Breast milk + formula milk | 32 | 15 | 13 | 1 | 1 | ||
| Solid food | 29 | 12 | 7 | 3 | 2 | ||
| Diarrhoea type | Watery | 84 | 14 | 9 | 3 | 2 | 0.05 |
| Mucoid | 33 | 12 | 11 | 1 | 0 | ||
| Bloody | 13 | 3 | 1 | 1 | 1 | ||
| Loose | 7 | 0 | 0 | 0 | 0 | ||
| Duration of diarrhoea | 1 day | 22 | 7 | 5 | 1 | 1 | 0.04 |
| 2–3 days | 50 | 5 | 3 | 1 | 1 | ||
| 4–5 days | 50 | 15 | 11 | 3 | 1 | ||
| > 6 days | 7 | 0 | 0 | 0 | 0 | ||
| No information | 8 | 2 | 2 | 0 | 0 | ||
| Admission type | Admitted | 35 | 18 | 14 | 3 | 1 | < 0.001 |
| Outpatients | 90 | 8 | 5 | 1 | 2 | ||
| No information | 12 | 3 | 2 | 1 | 0 | ||
Figure 2Confirmation of VTEC
Distribution of verotoxin gene (VT1 and VT2) in non-O157 E. coli isolates
| Virulence genes | Six serogroups of non-O157 | ||||||
|---|---|---|---|---|---|---|---|
|
| |||||||
| O111 | O121 | O145 | O26 | O45 | O103 | ||
| None | 4 | 5 | 5 | 2 | 1 | 3 | < 0.001 |
| VT1 | 3 | 3 | 3 | 6 | 4 | 2 | |
| VT2 | 1 | 1 | 0 | 2 | 0 | 1 | |
| VT1 and VT2 | 0 | 0 | 0 | 1 | 1 | 1 | |
Figure 3Antibiogram patterns of VTEC
MDR profile of VTEC isolates
| Resistance | Types of antibiotics | VTEC isolates | ||||||
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| Male ( | Female ( | Total ( | ||||||
|
| ||||||||
| No | % | No | % | No | % | |||
| Resistance to 3 agents | IMP, TZP, CTX | 4 | 13 | 9 | 31 | 13 | 44 | < 0.001 |
| Resistance to 4 agents | ATM, MEM, CIP, CTX | 3 | 10 | 3 | 10 | 6 | 20 | |
| Resistance to 5 agents | FEP, ATM, CEX, MEM, AMC | 1 | 3 | 2 | 6 | 3 | 10 | |
| Resistance to 6 agents | CIP, CEX, AMC, CTX, ATM, IMP | - | - | 1 | 3 | 1 | 3 | |
| Resistance to 10 agents | AMC, CEX, CTX, ATM, TZP, CAZ, CIP, MEM, IMP, FEP | - | - | 1 | 3 | 1 | 3 | |