Literature DB >> 35528192

The Genetic Landscape of Ocular Adnexa MALT Lymphoma Reveals Frequent Aberrations in NFAT and MEF2B Signaling Pathways.

Marco Magistri1, Lanie E Happ2, Jeremy Ramdial1, XiaoQing Lu1, Vasileios Stathias3,4, Kranthi Kunkalla5, Nitin Agarwal5, Xiaoyu Jiang1, Stephan C Schürer3,4, Sander R Dubovy6, Jennifer R Chapman5, Francisco Vega5, Sandeep Dave2, Izidore S Lossos1,3.   

Abstract

A comprehensive constellation of somatic non-silent mutations and copy number (CN) variations in ocular adnexa marginal zone lymphoma (OAMZL) is unknown. By utilizing whole-exome sequencing in 69 tumors we define the genetic landscape of OAMZL. Mutations and CN changes in CABIN1 (30%), RHOA (26%), TBL1XR1 (22%), and CREBBP (17%) and inactivation of TNFAIP3 (26%) were among the most common aberrations. Candidate cancer driver genes cluster in the B-cell receptor (BCR), NFkB, NOTCH and NFAT signaling pathways. One of the most commonly altered genes is CABIN1, a calcineurin inhibitor acting as a negative regulator of the NFAT and MEF2B transcriptional activity. CABIN1 deletions enhance BCR-stimulated NFAT and MEF2B transcriptional activity, while CABIN1 mutations enhance only MEF2B transcriptional activity by impairing binding of mSin3a to CABIN1. Our data provide an unbiased identification of genetically altered genes that may play a role in the molecular pathogenesis of OAMZL and serve as therapeutic targets.

Entities:  

Keywords:  CABIN1; MEF2B; Marginal zone lymphoma; NFAT; Orbital adnexa lymphoma

Year:  2021        PMID: 35528192      PMCID: PMC9075502          DOI: 10.1158/2767-9764.crc-21-0022

Source DB:  PubMed          Journal:  Cancer Res Commun        ISSN: 2767-9764


  70 in total

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Authors:  Yolanda R Carrasco; Sebastian J Fleire; Thomas Cameron; Michael L Dustin; Facundo D Batista
Journal:  Immunity       Date:  2004-05       Impact factor: 31.745

2.  Detecting false-positive signals in exome sequencing.

Authors:  Karin V Fuentes Fajardo; David Adams; Christopher E Mason; Murat Sincan; Cynthia Tifft; Camilo Toro; Cornelius F Boerkoel; William Gahl; Thomas Markello
Journal:  Hum Mutat       Date:  2012-03-05       Impact factor: 4.878

3.  Transcriptional regulation of serine/threonine protein kinase (AKT) genes by glioma-associated oncogene homolog 1.

Authors:  Nitin K Agarwal; Changju Qu; Kranthi Kunkalla; Kranthi Kunkulla; Yadong Liu; Francisco Vega
Journal:  J Biol Chem       Date:  2013-04-10       Impact factor: 5.157

Review 4.  Marginal zone B cells: virtues of innate-like antibody-producing lymphocytes.

Authors:  Andrea Cerutti; Montserrat Cols; Irene Puga
Journal:  Nat Rev Immunol       Date:  2013-02       Impact factor: 53.106

5.  Palimpsest: an R package for studying mutational and structural variant signatures along clonal evolution in cancer.

Authors:  Jayendra Shinde; Quentin Bayard; Sandrine Imbeaud; Théo Z Hirsch; Feng Liu; Victor Renault; Jessica Zucman-Rossi; Eric Letouzé
Journal:  Bioinformatics       Date:  2018-10-01       Impact factor: 6.937

6.  Regression of primary gastric lymphoma of mucosa-associated lymphoid tissue type after cure of Helicobacter pylori infection. MALT Lymphoma Study Group.

Authors:  E Bayerdörffer; A Neubauer; B Rudolph; C Thiede; N Lehn; S Eidt; M Stolte
Journal:  Lancet       Date:  1995-06-24       Impact factor: 79.321

7.  Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.

Authors:  Bjoern Chapuy; Chip Stewart; Andrew J Dunford; Jaegil Kim; Atanas Kamburov; Robert A Redd; Mike S Lawrence; Margaretha G M Roemer; Amy J Li; Marita Ziepert; Annette M Staiger; Jeremiah A Wala; Matthew D Ducar; Ignaty Leshchiner; Ester Rheinbay; Amaro Taylor-Weiner; Caroline A Coughlin; Julian M Hess; Chandra S Pedamallu; Dimitri Livitz; Daniel Rosebrock; Mara Rosenberg; Adam A Tracy; Heike Horn; Paul van Hummelen; Andrew L Feldman; Brian K Link; Anne J Novak; James R Cerhan; Thomas M Habermann; Reiner Siebert; Andreas Rosenwald; Aaron R Thorner; Matthew L Meyerson; Todd R Golub; Rameen Beroukhim; Gerald G Wulf; German Ott; Scott J Rodig; Stefano Monti; Donna S Neuberg; Markus Loeffler; Michael Pfreundschuh; Lorenz Trümper; Gad Getz; Margaret A Shipp
Journal:  Nat Med       Date:  2018-04-30       Impact factor: 53.440

8.  Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma.

Authors:  Roland Schmitz; George W Wright; Da Wei Huang; Calvin A Johnson; James D Phelan; James Q Wang; Sandrine Roulland; Monica Kasbekar; Ryan M Young; Arthur L Shaffer; Daniel J Hodson; Wenming Xiao; Xin Yu; Yandan Yang; Hong Zhao; Weihong Xu; Xuelu Liu; Bin Zhou; Wei Du; Wing C Chan; Elaine S Jaffe; Randy D Gascoyne; Joseph M Connors; Elias Campo; Armando Lopez-Guillermo; Andreas Rosenwald; German Ott; Jan Delabie; Lisa M Rimsza; Kevin Tay Kuang Wei; Andrew D Zelenetz; John P Leonard; Nancy L Bartlett; Bao Tran; Jyoti Shetty; Yongmei Zhao; Dan R Soppet; Stefania Pittaluga; Wyndham H Wilson; Louis M Staudt
Journal:  N Engl J Med       Date:  2018-04-12       Impact factor: 91.245

9.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

10.  Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas.

Authors:  De-Chen Lin; Huy Q Dinh; Jian-Jun Xie; Anand Mayakonda; Tiago Chedraoui Silva; Yan-Yi Jiang; Ling-Wen Ding; Jian-Zhong He; Xiu-E Xu; Jia-Jie Hao; Ming-Rong Wang; Chunquan Li; Li-Yan Xu; En-Min Li; Benjamin P Berman; H Phillip Koeffler
Journal:  Gut       Date:  2017-08-31       Impact factor: 31.793

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  1 in total

1.  A roadmap for clinical trial design in marginal zone lymphoma.

Authors:  Juan Pablo Alderuccio; Thomas Habermann; Russ Kuker; Craig H Moskowitz; Andrew D Zelenetz; Izidore S Lossos
Journal:  Am J Hematol       Date:  2022-09-12       Impact factor: 13.265

  1 in total

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