| Literature DB >> 35527015 |
Md Amirul Hasan1, Md Humayun Kabir1, Yu Miyaoka1, Makiko Yamaguchi2, Kazuaki Takehara1,2.
Abstract
After improvement of hygiene protocols on boots in a bovine operation (farm A) in Ibaraki, Japan in September 2017, mortality of calves and the detection of 4 viral pathogen indicators, including bovine rotavirus A (RVA), became significantly low for one year. Subsequently, in the present study, these indicators and mortality were monitored and confirmed all were still low, except for the detection rate of bovine RVA in calves less than 3 weeks old. The present study aimed to investigate G and P genotypic profiles of RVAs in farm A from 2018 to 2020. Molecular analysis using semi-nested multiplex RT-PCR of positive RVAs (n=122) and sequencing of selected samples revealed the presence of G6, G8, G10, P[1], P[5] and P[11] genotypes and the prevalence of G and/or P combination and mixed infections. The most common combination of G and P types was G10P[11] (41.8%), followed by mixed infection with G6+G10P[5] (11.5%). Phylogenetic analysis of RVAs showed clustering with bovine and other animal-derived RVA strains, suggesting the possibility of multiple reassortant events with strains of bovine and others animal origins. Noteworthy as well is that vaccinated cattle might fail to provide their offspring with maternal immunity against RVA infections, due to insufficient colostrum feeding. Our findings further highlight the importance of RVA surveillance in bovine populations, which may be useful to improving effective routine vaccination and hygiene practices on bovine farms.Entities:
Keywords: VP4 and VP7 genes; biosecurity; bovine rotavirus A; genotyping; phylogenetic analysis
Mesh:
Year: 2022 PMID: 35527015 PMCID: PMC9353085 DOI: 10.1292/jvms.22-0026
Source DB: PubMed Journal: J Vet Med Sci ISSN: 0916-7250 Impact factor: 1.105
Comparison of virus detection rates (%) before and after improvement of hygiene protocols on boots, in reference to calves at different age groups
| Calves at three weeks of age or younger | Calves over three weeks of age | |||||
|---|---|---|---|---|---|---|
| Before improvement of hygiene protocols on boots | After improvement of hygiene protocols on boots | Following one year improvement of hygiene protocols on boots | Before improvement of hygiene protocols on boots | After improvement of hygiene protocols on boots | Following one year improvement of hygiene protocols on boots | |
| (n=256 samples) | (n=198 samples) | (n=202 samples) | (n=304 samples) | (n=202 samples) | (n=198 samples) | |
| RVA | 39.1 | 22.7** | 38.6 | 13.8 | 10.4 | 2.0** |
| BToV | 8.2 | 1.0** | 8.9 | 11.2 | 4.0** | 11.1 |
| BEV | 28.9 | 8.6** | 13.9** | 56.6 | 16.8** | 12.6** |
| BCV | 23.4 | 8.1** | 12.9** | 33.2 | 35.6 | 16.2** |
| Reference | [ | [ | This study | [ | [ | This study |
The total number of samples of calves at three weeks of age or younger before, after and following one year of improvement of hygiene protocols on boots, was 256, 198 and 202 respectively. The total number of samples of calves over three weeks of age before, after and following one year improvement was 304, 202 and 198, respectively. Sampling years from October 2016 to October 2017. Sampling years from December 2017 to October 2018. Sampling years from December 2018 to October 2019. **The significance of difference compared with the period preceding the improvement of hygiene protocols (P<0.01).
Comparison of mortality (%) of calves less than 2 months-old before and after improvement of hygiene protocols
| Period | Month | Average | Reference | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Nov. | Dec. | Jan. | Feb. | Mar. | Apr. | May | Jun. | Jul. | Aug. | Sep. | Oct. | |||
| Before improvement | 3.75 | 1.32 | 1.00 | 0.98 | 1.37 | 2.78 | 1.55 | 1.21 | 1.75 | 0.58 | 0.83 | 1.03 | 1.51 | [ |
| After improvement | 0.36 | 0.74 | 0.37 | 0.00 | 0.32 | 0.00 | 0.00 | 0.44 | 0.00 | 0.33 | 0.68 | 0.33 | 0.30** | [ |
| Following one year improvement | 0.00 | 0.65 | 0.98 | 0.34 | 0.66 | 0.84 | 0.50 | 1.34 | 1.35 | 1.43 | 0.00 | 0.31 | 0.70** | This study |
**The significance of difference of the average mortality compared with the period preceding the improvement (P<0.01).
Distribution and relative frequencies of G and P genotype combinations due to mixed infections of different rotavirus A (RVA)
| Genotype | P[1] | P[5] | P[11] | P[1+5] | P[1+11] | P[5+11] | Total |
|---|---|---|---|---|---|---|---|
| G6 | 6 (4.9%) | 5 (4.1%) | 13 (10.7%) | 0 (0%) | 1 (0.8%) | 6 (4.9%) | 31 (25.4%) |
| G8 | 4 (3.3%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (0.8%) | 0 (0%) | 5 (4.1%) |
| G10 | 0 (0%) | 0 (0%) | 51 (41.8%) | 0 (0%) | 5 (4.1%) | 0 (0%) | 56 (45.9%) |
| G6+G8 | 0 (0%) | 0 (0%) | 1 (0.8%) | 0 (0%) | 4 (3.3%) | 0 (0%) | 5 (4.1%) |
| G6+G10 | 0 (0%) | 14 (11.5%) | 4 (3.3%) | 0 (0%) | 0 (0%) | 7 (5.7%) | 25 (20.5%) |
| Total | 10 (8.2%) | 19 (15.6%) | 69 (56.6%) | 0 (0%) | 11 (9.0%) | 13 (10.6%) | |
| 79 (64.8%) | 43 (35.2%) | 122 (100%) | |||||
Mixed infection.
Fig. 1.Phylogenetic tree of (1a) G6, (1b) G8 and (1c) G10 genotype constructed using MEGA-X based on nucleotide sequences of the VP7 encoding genes for representative Japanese bovine rotaviruses A (closed circle). The GeneBank accession numbers of the strains are shown, and lineages are indicated. For the construction of the phylogenetic trees, the evolutionary history was inferred using the maximum-likelihood method based on the general time reversible model with discrete gamma distribution and invariant sites by 1,000 bootstrap replicates.
Fig. 2.Phylogenetic tree of (2a) P[1], (2b) P[5] and (2c) P[11] genotype constructed using MEGA-X based on nucleotide sequences of the VP4 encoding genes for representative Japanese bovine rotaviruses A (closed circle). The GeneBank accession numbers of the strains are shown, and lineages are indicated. For the construction of the phylogenetic trees, the evolutionary history was inferred using the maximum-likelihood method based on the general time reversible model with discrete gamma distribution and invariant sites by 1,000 bootstrap replicates.