Literature DB >> 35524127

SAturated Transposon Analysis in Yeast (SATAY) for Deep Functional Mapping of Yeast Genomes.

Agnès H Michel1, Benoît Kornmann2.   

Abstract

Genome-wide transposon mutagenesis followed by deep sequencing allows the genome-wide mapping of growth-affecting loci in a straightforward and time-efficient way.SAturated Transposon Analysis in Yeast (SATAY) takes advantage of a modified maize transposon that is highly mobilizable in S. cerevisiae. SATAY allows not only the genome-wide mapping of genes required for growth in select conditions (such as genetic interactions or drug sensitivity/resistance), but also of protein sub-domains, as well as the creation of gain- and separation-of-function alleles. From strain preparation to the mapping of sequencing reads, we detail all the steps for the making and analysis of SATAY libraries in any S. cerevisiae lab, requiring only ordinary equipment and access to a Next-Gen sequencing platform.
© 2022. The Author(s).

Entities:  

Keywords:  Ac/Ds; Genome-wide insertional mutagenesis; Next-generation sequencing; Transposon

Mesh:

Substances:

Year:  2022        PMID: 35524127     DOI: 10.1007/978-1-0716-2257-5_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

1.  Integration profiling of gene function with dense maps of transposon integration.

Authors:  Yabin Guo; Jung Min Park; Bowen Cui; Elizabeth Humes; Sunil Gangadharan; Stevephen Hung; Peter C FitzGerald; Kwang-Lae Hoe; Shiv I S Grewal; Nancy L Craig; Henry L Levin
Journal:  Genetics       Date:  2013-07-26       Impact factor: 4.562

2.  Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides.

Authors:  Samuel T Coradetti; Dominic Pinel; Gina M Geiselman; Masakazu Ito; Stephen J Mondo; Morgann C Reilly; Ya-Fang Cheng; Stefan Bauer; Igor V Grigoriev; John M Gladden; Blake A Simmons; Rachel B Brem; Adam P Arkin; Jeffrey M Skerker
Journal:  Elife       Date:  2018-03-09       Impact factor: 8.140

3.  Hermes Transposon Mutagenesis Shows [URE3] Prion Pathology Prevented by a Ubiquitin-Targeting Protein: Evidence for Carbon/Nitrogen Assimilation Cross Talk and a Second Function for Ure2p in Saccharomyces cerevisiae.

Authors:  Herman K Edskes; Maryam Mukhamedova; Bouke K Edskes; Reed B Wickner
Journal:  Genetics       Date:  2018-05-16       Impact factor: 4.562

4.  Functional mapping of yeast genomes by saturated transposition.

Authors:  Agnès H Michel; Riko Hatakeyama; Philipp Kimmig; Meret Arter; Matthias Peter; Joao Matos; Claudio De Virgilio; Benoît Kornmann
Journal:  Elife       Date:  2017-05-08       Impact factor: 8.140

5.  Genome-Wide Determination of Gene Essentiality by Transposon Insertion Sequencing in Yeast Pichia pastoris.

Authors:  Jinxiang Zhu; Ruiqing Gong; Qiaoyun Zhu; Qiulin He; Ning Xu; Yichun Xu; Menghao Cai; Xiangshan Zhou; Yuanxing Zhang; Mian Zhou
Journal:  Sci Rep       Date:  2018-07-05       Impact factor: 4.379

6.  Transposon insertional mutagenesis in Saccharomyces uvarum reveals trans-acting effects influencing species-dependent essential genes.

Authors:  Monica R Sanchez; Celia Payen; Frances Cheong; Blake T Hovde; Sarah Bissonnette; Adam P Arkin; Jeffrey M Skerker; Rachel B Brem; Amy A Caudy; Maitreya J Dunham
Journal:  Genome Res       Date:  2019-01-11       Impact factor: 9.438

7.  Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.

Authors:  Tim van Opijnen; Kip L Bodi; Andrew Camilli
Journal:  Nat Methods       Date:  2009-09-20       Impact factor: 28.547

8.  Candida albicans gains azole resistance by altering sphingolipid composition.

Authors:  Jiaxin Gao; Haitao Wang; Zeyao Li; Ada Hang-Heng Wong; Yi-Zheng Wang; Yahui Guo; Xin Lin; Guisheng Zeng; Haoping Liu; Yue Wang; Jianbin Wang
Journal:  Nat Commun       Date:  2018-10-29       Impact factor: 14.919

9.  Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida albicans.

Authors:  Ella Shtifman Segal; Vladimir Gritsenko; Anton Levitan; Bhawna Yadav; Naama Dror; Jacob L Steenwyk; Yael Silberberg; Kevin Mielich; Antonis Rokas; Neil A R Gow; Reinhard Kunze; Roded Sharan; Judith Berman
Journal:  mBio       Date:  2018-10-30       Impact factor: 7.867

Review 10.  A decade of advances in transposon-insertion sequencing.

Authors:  Amy K Cain; Lars Barquist; Andrew L Goodman; Ian T Paulsen; Julian Parkhill; Tim van Opijnen
Journal:  Nat Rev Genet       Date:  2020-06-12       Impact factor: 53.242

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