| Literature DB >> 35516635 |
Ianatul Khoiroh1, Sze Ying Lee2, Mohsen Pirdashti3, Ming-Jer Lee4.
Abstract
By means of molecular dynamics (MD) simulations, we explored the structural properties of polyethylene glycol monolaurate (PEGML) in water and in various aliphatic alcohols (methanol, ethanol, 2-propanol, 2-butanol, tert-butanol, and 1-pentanol). The PEGML and the alcohols were simulated using the optimized potentials for liquid simulations, all-atom (OPLS-AA) force field and water using the extended simple point charge (SPC/E) model. From the isothermal-isobaric (NPT, constant number of particles, constant pressure, and constant temperature) ensemble, we extracted the densities from the simulations and compared them with those from experimental results in order to confirm the validity of the selected force fields. The densities from MD simulations are in good agreement with the experimental values. To gain more insight into the nature of interactions between the PEGML and the solvent molecules, we analyzed the hydrogen-bonds, the electrostatic (Coulomb) interactions, and the van der Waals (Lennard-Jones) interaction energies extracted from MD simulations. The results were further strengthened by computing the solvation free energy by employing the free energy perturbation (FEP) approach. In this method, the free energy difference was computed by using the Bennet Acceptance Ratio (BAR) method. Moreover, the radial distribution functions were analyzed in order to gain more understanding of the solution behavior at the molecular level. This journal is © The Royal Society of Chemistry.Entities:
Year: 2020 PMID: 35516635 PMCID: PMC9054503 DOI: 10.1039/c9ra09688d
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
The description of the materials
| Compound |
| Source | Mass fraction purity |
|---|---|---|---|
| PEGML | 400 ( | Sigma-Aldrich, USA | >0.99 |
| Methanol | 32.04 | Sigma-Aldrich, USA | >0.998 |
| Ethanol | 46.07 | Sigma-Aldrich, USA | >0.998 |
| 2-Propanol | 60.10 | Sigma-Aldrich, USA | >0.998 |
| 2-Butanol | 74.12 | Sigma-Aldrich, USA | >0.998 |
|
| 74.12 | Acros, USA | >0.995 |
| 1-Pentanol | 88.15 | Sigma-Aldrich, USA | >0.998 |
Simulated and experimental densities for pure PEGML and its binary systems at 298.15 K
| System |
|
| 102Δ | Box size/nm3 |
|---|---|---|---|---|
| PEGML | 0.9711 ± 0.0071 | 0.9789 | 0.8 | 3.57 |
| M1 | — | — | — | 3.32 |
| M2 | 0.7907 ± 0.0002 | 0.8062 | 1.9 | 4.23 |
| M3 | 0.8016 ± 0.0002 | 0.7994 | 0.3 | 4.67 |
| M4 | 0.8004 ± 0.0004 | 0.7930 | 0.9 | 5.10 |
| M5 | 0.8019 ± 0.0001 | 0.8102 | 1.0 | 5.44 |
| M6 | 0.8264 ± 0.0002 | 0.7901 | 4.6 | 5.38 |
| M7 | 0.8126 ± 0.0001 | 0.8176 | 0.6 | 5.71 |
M1: PEGML + water; M2: PEGML + methanol; M3: PEGML + ethanol; M4: PEGML + 2-propanol; M5: PEGML + 2-butanol; M6: PEGML + tert-butanol; M7: PEGML + 1-pentanol. The mole fraction of PEGML is 0.01 in each binary mixture.
u(ρ) = 0.00005 g cm−3.
Δρ/ρ = |ρsim − ρexpt|/ρexpt, where subscripts sim and expt are the simulated and the experimental values, respectively.
Fig. 1Snapshots for the configurations of PEGML (red) in the solvent (green) after 55 ns simulation: (a) PEGML; (b) PEGML + water; (c) PEGML + methanol; (d) PEGML + ethanol; (e) PEGML + 2-propanol; (f) PEGML + 2-butanol; (g) PEGML + tert-butanol; (h) PEGML + 1-pentanol. All solvent molecules were omitted for the ease of visualization.
The number of intramolecular hydrogen bonds and their corresponding lifetime between adjacent oligomer in solvents
| System | Interaction | Number of hydrogen bonds | Hydrogen bond lifetime (ps) |
|---|---|---|---|
| M1 | PEGML–solvent | 3.993 | 3.638 |
| PEGML–PEGML | 0.059 | 4.477 | |
| Solvent–solvent | 1.760 | 4.332 | |
| M2 | PEGML–solvent | 1.531 | 2.027 |
| PEGML–PEGML | 0.017 | 2.241 | |
| Solvent–solvent | 0.895 | 6.396 | |
| M3 | PEGML–solvent | 1.175 | 3.296 |
| PEGML–PEGML | 0.017 | 3.092 | |
| Solvent–solvent | 0.900 | 10.812 | |
| M4 | PEGML–solvent | 1.116 | 1.431 |
| PEGML–PEGML | 0.017 | 2.443 | |
| Solvent–solvent | 0.609 | 3.269 | |
| M5 | PEGML–solvent | 0.700 | 1.096 |
| PEGML–PEGML | 0.010 | 2.242 | |
| Solvent–solvent | 0.246 | 1.474 | |
| M6 | PEGML–solvent | 0.930 | 3.968 |
| PEGML–PEGML | 0.009 | 3.056 | |
| Solvent–solvent | 0.842 | 104.869 | |
| M7 | PEGML–solvent | 0.938 | 8.229 |
| PEGML–PEGML | 0.016 | 2.923 | |
| Solvent–solvent | 0.877 | 36.045 |
M1: PEGML + water; M2: PEGML + methanol; M3: PEGML + ethanol; M4: PEGML + 2-propanol; M5: PEGML + 2-butanol; M6: PEGML + tert-butanol; M7: PEGML + 1-pentanol.
The electrostatic (Coulomb) and the van-der Waals (Lennard-Jones) energies obtained from the MD simulations for the interaction of (PEGML–PEGML) and (PEGML–alcohol)
| System | Coulomb/kJ mol−1 | Lennard-Jones/kJ mol−1 | ||
|---|---|---|---|---|
| PEGML–PEGML | PEGML–alcohol | PEGML–PEGML | PEGML–alcohol | |
| M2 | 157.0 | −338.5 | −339.6 | −1914.8 |
| M3 | 148.7 | −205.6 | −380.2 | −1951.0 |
| M4 | 155.8 | −60.9 | −281.2 | −2142.4 |
| M5 | 156.9 | −15.2 | −268.5 | −2212.2 |
| M6 | 147.6 | −105.5 | −309.5 | −2141.4 |
| M7 | 158.7 | −159.8 | −276.8 | −2275.8 |
M2: PEGML + methanol; M3: PEGML + ethanol; M4: PEGML + 2-propanol; M5: PEGML + 2-butanol; M6: PEGML + tert-butanol; M7: PEGML + 1-pentanol.
Fig. 2Radial distribution functions for the interactions of the proton-acceptors or donors of PEGML molecules with solvent sites: (a) OHPEGML–HOsolvent; (b) HOPEGML–OHsolvent.
Fig. 3Radial distribution functions for the interactions of the proton-acceptors or donors of PEGML molecules with solvent sites: (a) Oether–HOsolvent; (b) Ocarbonyl–HOsolvent; (c) Oester–HOsolvent.
Fig. 4Radial distribution functions of atom O in the PEGML with respect to those in the alcohols.
Fig. 5Radial distribution functions of atom O in the PEGML with respect to those in the alcohols: (a) Oether–OHsolvent; (b) Ocarbonyl–OHsolvent; (c) Oester–OHsolvent.
Solvation free energy of PEGML in different solvents at 298 Ka
| Solvent | Δ |
|---|---|
| Water | 13.31 ± 0.49 |
| Methanol | −46.28 ± 0.67 |
| Ethanol | −55.08 ± 0.42 |
| 2-Propanol | −58.34 ± 0.59 |
| 2-Butanol | −82.36 ± 0.94 |
|
| −80.99 ± 1.84 |
| 1-Pentanol | −84.57 ± 1.43 |
The mole fraction of PEGML is 0.01 in each binary mixture.