Literature DB >> 35509058

Fusing pre-trained convolutional neural networks features for multi-differentiated subtypes of liver cancer on histopathological images.

Xiaogang Dong1, Min Li2,3, Panyun Zhou4, Xin Deng4, Siyu Li4, Xingyue Zhao4, Yi Wu4, Jiwei Qin5, Wenjia Guo6,7.   

Abstract

Liver cancer is a malignant tumor with high morbidity and mortality, which has a tremendous negative impact on human survival. However, it is a challenging task to recognize tens of thousands of histopathological images of liver cancer by naked eye, which poses numerous challenges to inexperienced clinicians. In addition, factors such as long time-consuming, tedious work and huge number of images impose a great burden on clinical diagnosis. Therefore, our study combines convolutional neural networks with histopathology images and adopts a feature fusion approach to help clinicians efficiently discriminate the differentiation types of primary hepatocellular carcinoma histopathology images, thus improving their diagnostic efficiency and relieving their work pressure. In this study, for the first time, 73 patients with different differentiation types of primary liver cancer tumors were classified. We performed an adequate classification evaluation of liver cancer differentiation types using four pre-trained deep convolutional neural networks and nine different machine learning (ML) classifiers on a dataset of liver cancer histopathology images with multiple differentiation types. And the test set accuracy, validation set accuracy, running time with different strategies, precision, recall and F1 value were used for adequate comparative evaluation. Proved by experimental results, fusion networks (FuNet) structure is a good choice, which covers both channel attention and spatial attention, and suppresses channel interference with less information. Meanwhile, it can clarify the importance of each spatial location by learning the weights of different locations in space, then apply it to the study of classification of multi-differentiated types of liver cancer. In addition, in most cases, the Stacking-based integrated learning classifier outperforms other ML classifiers in the classification task of multi-differentiation types of liver cancer with the FuNet fusion strategy after dimensionality reduction of the fused features by principle component analysis (PCA) features, and a satisfactory result of 72.46% is achieved in the test set, which has certain practicality.
© 2022. The Author(s).

Entities:  

Keywords:  Feature fusion; FuNet; Histopathological images; Liver cancer

Mesh:

Year:  2022        PMID: 35509058      PMCID: PMC9066403          DOI: 10.1186/s12911-022-01798-6

Source DB:  PubMed          Journal:  BMC Med Inform Decis Mak        ISSN: 1472-6947            Impact factor:   3.298


  36 in total

1.  Automated classification of hepatocellular carcinoma differentiation using multiphoton microscopy and deep learning.

Authors:  Hongxin Lin; Chao Wei; Guangxing Wang; Hu Chen; Lisheng Lin; Ming Ni; Jianxin Chen; Shuangmu Zhuo
Journal:  J Biophotonics       Date:  2019-04-01       Impact factor: 3.207

2.  3D segmentation of exterior wall surface of abdominal aortic aneurysm from CT images using variable neighborhood search.

Authors:  Thanongchai Siriapisith; Worapan Kusakunniran; Peter Haddawy
Journal:  Comput Biol Med       Date:  2019-02-06       Impact factor: 4.589

Review 3.  Neuroimaging and Machine Learning for Dementia Diagnosis: Recent Advancements and Future Prospects.

Authors:  Md Rishad Ahmed; Yuan Zhang; Zhiquan Feng; Benny Lo; Omer T Inan; Hongen Liao
Journal:  IEEE Rev Biomed Eng       Date:  2018-12-11

4.  Transfer learning with pre-trained deep convolutional neural networks for the automatic assessment of liver steatosis in ultrasound images.

Authors:  Elena Codruta Constantinescu; Anca-Loredana Udriștoiu; Ștefan Cristinel Udriștoiu; Andreea Valentina Iacob; Lucian Gheorghe Gruionu; Gabriel Gruionu; Larisa Săndulescu; Adrian Săftoiu
Journal:  Med Ultrason       Date:  2020-12-29       Impact factor: 1.611

5.  Machine learning-based histological classification that predicts recurrence of peripheral lung squamous cell carcinoma.

Authors:  Yutaro Koike; Keiju Aokage; Kosuke Ikeda; Tokiko Nakai; Kenta Tane; Tomohiro Miyoshi; Masato Sugano; Motohiro Kojima; Satoshi Fujii; Takeshi Kuwata; Atsushi Ochiai; Toshiyuki Tanaka; Kenji Suzuki; Masahiro Tsuboi; Genichiro Ishii
Journal:  Lung Cancer       Date:  2020-07-18       Impact factor: 5.705

6.  Identification of Imaging Predictors Discriminating Different Primary Liver Tumours in Patients with Chronic Liver Disease on Gadoxetic Acid-enhanced MRI: a Classification Tree Analysis.

Authors:  Hyun Jeong Park; Kyung Mi Jang; Tae Wook Kang; Kyoung Doo Song; Seong Hyun Kim; Young Kon Kim; Dong Ik Cha; Joungyoun Kim; Juna Goo
Journal:  Eur Radiol       Date:  2015-12-03       Impact factor: 5.315

7.  Overcoming the limitations of patch-based learning to detect cancer in whole slide images.

Authors:  Ozan Ciga; Tony Xu; Sharon Nofech-Mozes; Shawna Noy; Fang-I Lu; Anne L Martel
Journal:  Sci Rep       Date:  2021-04-26       Impact factor: 4.379

8.  Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features.

Authors:  Kun-Hsing Yu; Ce Zhang; Gerald J Berry; Russ B Altman; Christopher Ré; Daniel L Rubin; Michael Snyder
Journal:  Nat Commun       Date:  2016-08-16       Impact factor: 14.919

Review 9.  Artificial Intelligence in Lung Cancer Pathology Image Analysis.

Authors:  Shidan Wang; Donghan M Yang; Ruichen Rong; Xiaowei Zhan; Junya Fujimoto; Hongyu Liu; John Minna; Ignacio Ivan Wistuba; Yang Xie; Guanghua Xiao
Journal:  Cancers (Basel)       Date:  2019-10-28       Impact factor: 6.639

10.  Can pre-trained convolutional neural networks be directly used as a feature extractor for video-based neonatal sleep and wake classification?

Authors:  Muhammad Awais; Xi Long; Bin Yin; Chen Chen; Saeed Akbarzadeh; Saadullah Farooq Abbasi; Muhammad Irfan; Chunmei Lu; Xinhua Wang; Laishuan Wang; Wei Chen
Journal:  BMC Res Notes       Date:  2020-11-04
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