| Literature DB >> 35505811 |
Hao Lin1, Jie Zhang1, Shaobo Dong2, Yaning Liu1, Peipei Liu1, George F Gao1,3, William J Liu1,3, Guizhen Wu1,3.
Abstract
Like antibody evaluation, using an effective antigen-specific T-cell immunity assessment method in coronavirus disease 2019 (COVID-19) patients, survivors and vaccinees is crucial for understanding the immune persistence, prognosis assessment, and vaccine development for COVID-19. This study evaluated an empirically adjusted enzyme-linked immunospot assay for detecting severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-specific T-cell immunity in 175 peripheral blood samples from COVID-19 convalescents and healthy individuals. Results of viral nucleic acid were used as the gold standard of infection confirmation. The SARS-CoV-2M peptide pool had higher sensitivity of 85% and specificity of 71% for the single peptide pool. For combined peptide pools, the parallel evaluation (at least one of the peptide pools is positive) of total peptide pools (S1&S2&M&N) had higher sensitivity (up to 93%), and the serial evaluation (all peptide pools are positive) of total peptide pools had higher specificity (up to 100%). The result of the serial evaluation was better than that of the parallel evaluation as a whole. The detection efficiency of M and N peptide pool serial evaluation appeared the highest, with a sensitivity of 80% and specificity of 93%. This T-cell immunity detection assay introduced in this report can achieve high operability and applicability. Therefore, it can be an effective SARS-CoV-2-specific cellular immune function evaluation method.Entities:
Keywords: COVID-19; ELISpot assay; SARS-CoV-2; Sensitivity; Specificity; T-cell response
Year: 2022 PMID: 35505811 PMCID: PMC9047432 DOI: 10.1016/j.bsheal.2022.04.005
Source DB: PubMed Journal: Biosaf Health ISSN: 2590-0536
Fig. 1Operation flow chart of the adjusted ELISpot assay detecting SARS-CoV-2-specific T-cell immunity. Abbreviations: PBMCs = Peripheral blood mononuclear cells; ELISpot = Enzyme-linked immunospot; DMSO = Dimethyl sulfoxide; IL-7 = Interleukin-7; IL-2 = Interleukin-2; PVDF = Polyvinylidene fluoride; IFN-γ = Interferon-γ; HRP = Horseradish peroxidase.
Evaluation of the adjusted ELISpot assay with single SARS-CoV-2 peptide pools.
| Sum | Accuracy | Sensitivity (95% CI) | Specificity (95% CI) | Youden index | +LR | -LR | Chi square | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Positive | Negative | ||||||||||
| Positive | 110 | 7 | 117 | 74.0% | 73.8% (66.0%–80.7%) | 75.0% (55.1%–89.3%) | 0.49 | 2.95 | 0.35 | 22.2609 | <0.0001 |
| Negative | 39 | 21 | 60 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 99 | 10 | 109 | 66.1% | 66.4% (58.3%–74.0%) | 64.3% (44.1%–81.4%) | 0.31 | 1.86 | 0.52 | 26.6667 | <0.0001 |
| Negative | 50 | 18 | 68 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 127 | 8 | 135 | 83.1% | 85.2% (78.5%–90.5%) | 71.4% (51.3%–86.8%) | 0.57 | 2.98 | 0.21 | 6.5333 | 0.0106 |
| Negative | 22 | 20 | 42 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 126 | 10 | 136 | 81.4% | 84.6% (77.7%–90.0%) | 64.3% (44.1%–81.4%) | 0.49 | 2.37 | 0.24 | 5.1212 | 0.0236 |
| Negative | 23 | 18 | 41 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
Abbreviations: ELISpot = Enzyme-linked immunospot; S = Spike protein; M = Membrane protein; N = Nucleocapsid protein; +LR = Positive likelihood ratio; -LR = Negative likelihood ratio; CI = Confidence interval.
S1&S2: Spike protein (S) were divided into S1 (res. 1–685) and S2 (res. 686–1273) pools according to the natural cleavage site.
McNemar test for the paired data of different peptide pool detecting assay compared to the gold standard.
Parallel evaluation of the adjusted ELISpot assay with combined SARS-CoV-2 peptide pools*.
| Sum | Accuracy | Sensitivity (95% CI) | Specificity (95% CI) | Youden index | +LR | -LR | Chi square | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Positive | Negative | ||||||||||
| Positive | 138 | 20 | 158 | 82.5% | 92.6% (87.2%–96.3%) | 28.6% (13.2%–48.7%) | 0.21 | 1.30 | 0.26 | 2.6129 | 0.1060 |
| Negative | 11 | 8 | 19 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 120 | 13 | 133 | 76.3% | 80.5% (73.3%–86.6%) | 53.6% (33.9%–72.5%) | 0.34 | 1.73 | 0.36 | 6.0952 | 0.0136 |
| Negative | 29 | 15 | 44 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 132 | 14 | 146 | 82.5% | 88.6% (82.4%–93.2%) | 50.0% (30.7%–69.4%) | 0.39 | 1.77 | 0.23 | 0.2903 | 0.5900 |
| Negative | 17 | 14 | 31 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 130 | 13 | 143 | 81.9% | 87.2% (80.8%–92.1%) | 53.6% (33.9%–71.5%) | 0.41 | 1.88 | 0.24 | 1.1250 | 0.2888 |
| Negative | 19 | 15 | 34 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 132 | 14 | 146 | 82.5% | 88.6% (82.4%–93.2%) | 50.0% (30.7%–69.4%) | 0.39 | 1.77 | 0.23 | 0.2903 | 0.5900 |
| Negative | 17 | 14 | 31 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 131 | 15 | 146 | 81.4% | 87.9% (81.6%–92.7%) | 46.4% (27.5%–66.1%) | 0.34 | 1.64 | 0.26 | 0.2727 | 0.6015 |
| Negative | 18 | 13 | 31 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 134 | 16 | 150 | 82.5% | 89.9% (83.9%–94.3%) | 42.9% (24.5%–62.8%) | 0.33 | 1.57 | 0.23 | 0.0323 | 0.8575 |
| Negative | 15 | 12 | 27 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
Abbreviations: ELISpot = Enzyme-linked immunospot; S = Spike protein; M = Membrane protein; N = Nucleocapsid protein; +LR = Positive likelihood ratio; -LR = Negative likelihood ratio; CI = Confidence interval.
*Positive: At least one peptide pool is positive. The others are the same as Table 1.
Serial evaluation of the adjusted ELISpot assay with combined SARS-CoV-2 peptide pools*.
| Sum | Accuracy | Sensitivity (95% CI) | Specificity (95% CI) | Youden index | +LR | -LR | Chi square | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Positive | Negative | ||||||||||
| Positive | 86 | 0 | 86 | 64.4% | 57.7% (49.4%–65.8%) | 100.0% (87.7%–100.0%) | 0.58 | / | 0.42 | 63.0000 | <0.0001 |
| Negative | 63 | 28 | 91 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 89 | 4 | 93 | 63.8% | 59.7% (51.4%–67.7%) | 85.7% (67.3%–96.0%) | 0.45 | 4.18 | 0.47 | 49.0000 | <0.0001 |
| Negative | 60 | 24 | 84 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 105 | 1 | 106 | 74.6% | 70.5% (62.5%–77.7%) | 96.4% (81.7%–99.9%) | 0.67 | 19.72 | 0.31 | 41.0889 | <0.0001 |
| Negative | 44 | 27 | 71 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 106 | 4 | 110 | 73.4% | 71.1% (63.2%–78.3%) | 85.7% (67.3%–96.0%) | 0.57 | 4.98 | 0.34 | 32.3617 | <0.0001 |
| Negative | 43 | 24 | 67 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 94 | 4 | 98 | 66.7% | 63.1% (54.8%–70.8%) | 85.7% (67.3%–96.0%) | 0.49 | 4.42 | 0.43 | 44.0847 | <0.0001 |
| Negative | 55 | 24 | 79 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 94 | 5 | 99 | 66.1% | 63.1% (54.8%–70.8%) | 82.1% (63.1%–93.9%) | 0.45 | 3.53 | 0.45 | 41.6667 | <0.0001 |
| Negative | 55 | 23 | 78 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
| Positive | 119 | 2 | 121 | 81.9% | 79.9% (72.5%–86.0%) | 92.9% (76.5%–99.1%) | 0.73 | 11.18 | 0.22 | 24.5000 | <0.0001 |
| Negative | 30 | 26 | 56 | ||||||||
| Sum | 149 | 28 | 177 | ||||||||
Abbreviations: ELISpot = Enzyme-linked immunospot; S = Spike protein; M = Membrane protein; N = Nucleocapsid protein; +LR = Positive likelihood ratio; -LR = Negative likelihood ratio; CI = Confidence interval.
*Positive: All peptide pools are positive. The others are the same as Table 1.
Evaluation of the adjusted ELISpot assay in 6-month and 12-month COVID-19 convalescents.
| Sum | Accuracy | Sensitivity (95% CI) | Specificity (95% CI) | Youden index | Chi square* | ||||
|---|---|---|---|---|---|---|---|---|---|
| Positive | Negative | ||||||||
| Positive | 71 | 20 | 91 | 76.0% | 93.4% (85.3%–97.8%) | 28.6% (13.2%–48.7%) | 0.22 | 0.7019 | 0.7619 |
| Negative | 5 | 8 | 13 | ||||||
| Sum | 76 | 28 | 104 | ||||||
| Positive | 67 | 20 | 87 | 74.3% | 91.8% (83.0%–96.9%) | 28.6% (13.2%–48.7%) | 0.20 | ||
| Negative | 6 | 8 | 14 | ||||||
| Sum | 73 | 28 | 101 | ||||||
| Positive | 41 | 0 | 41 | 66.3% | 53.9% (42.1%–65.4%) | 100.0% (87.7%–100.0%) | 0.54 | 0.3418 | 0.4075 |
| Negative | 35 | 28 | 63 | ||||||
| Sum | 76 | 28 | 104 | ||||||
| Positive | 45 | 0 | 45 | 72.3% | 61.6% (49.5%–72.8%) | 100.0% (87.7%–100.0%) | 0.20 | ||
| Negative | 28 | 28 | 56 | ||||||
| Sum | 73 | 28 | 101 | ||||||
Abbreviations: ELISpot = Enzyme-linked immunospot; CI = Confidence interval; 6m = 6 months of recovery; 12m = 12 months of recovery.
*Chi square test between 6m and 12m.
Sequence identity matrix between SARS-CoV-2 and CCCs*.
| 27.21 | 31.46 | 32.44 | 26.10 | |
| 29.22 | 35.29 | 39.19 | 27.73 | |
| 27.27 | 35.03 | 35.77 | 27.59 | |
*SARS-CoV-2: severe acute respiratory syndrome coronavirus 2; CCCs: common cold coronaviruses.