Literature DB >> 35497643

The twin-beginnings of COVID-19 in Asia and Europe-one prevails quickly.

Yongsen Ruan1, Haijun Wen1, Mei Hou1, Ziwen He1, Xuemei Lu2, Yongbiao Xue3, Xionglei He1, Ya-Ping Zhang2, Chung-I Wu1.   

Abstract

In the spread of SARS-CoV-2, there have been multiple waves of replacement between strains, each of which having a distinct set of mutations. The first wave is a group of four mutations (C241T, C3037T, C14408T and A23403G [this being the amino acid change D614G]; all designated 0 to 1 below). This DG (D614G) group, fixed at the start of the pandemic, is the foundation of all subsequent waves of strains. Curiously, the DG group is absent in early Asian samples but present (and likely common) in Europe from the beginning. European data show that the high fitness of DG1111 requires the synergistic effect of all four mutations. However, the European strains would have had no time to evolve the four DG mutations (0 to 1), had they come directly from the early Asian DG0000 strain. Very likely, the European DG1111 strain had acquired the highly adaptive DG mutations in pre-pandemic Europe and had been spreading in parallel with the Asian strains. Two recent reports further support this twin-beginning interpretation. There was a period of two-way spread between Asia and Europe but, by May 2020, the European strains had supplanted the Asian strains globally. This large-scale replacement of one set of mutations for another has since been replayed many times as COVID-19 progresses.
© The Author(s) 2021. Published by Oxford University Press on behalf of China Science Publishing & Media Ltd.

Entities:  

Keywords:  COVID-19; D614G; SARS-CoV-2; fitness advantage; twin-beginnings

Year:  2021        PMID: 35497643      PMCID: PMC9046579          DOI: 10.1093/nsr/nwab223

Source DB:  PubMed          Journal:  Natl Sci Rev        ISSN: 2053-714X            Impact factor:   23.178


  31 in total

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Authors:  Hsin-Chou Yang; Chun-Houh Chen; Jen-Hung Wang; Hsiao-Chi Liao; Chih-Ting Yang; Chia-Wei Chen; Yin-Chun Lin; Chiun-How Kao; Mei-Yeh Jade Lu; James C Liao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-12       Impact factor: 11.205

2.  A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.

Authors:  Andrew Rambaut; Edward C Holmes; Áine O'Toole; Verity Hill; John T McCrone; Christopher Ruis; Louis du Plessis; Oliver G Pybus
Journal:  Nat Microbiol       Date:  2020-07-15       Impact factor: 17.745

3.  Serologic Testing of US Blood Donations to Identify Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)-Reactive Antibodies: December 2019-January 2020.

Authors:  Sridhar V Basavaraju; Monica E Patton; Kacie Grimm; Mohammed Ata Ur Rasheed; Sandra Lester; Lisa Mills; Megan Stumpf; Brandi Freeman; Azaibi Tamin; Jennifer Harcourt; Jarad Schiffer; Vera Semenova; Han Li; Bailey Alston; Muyiwa Ategbole; Shanna Bolcen; Darbi Boulay; Peter Browning; Li Cronin; Ebenezer David; Rita Desai; Monica Epperson; Yamini Gorantla; Tao Jia; Panagiotis Maniatis; Kimberly Moss; Kristina Ortiz; So Hee Park; Palak Patel; Yunlong Qin; Evelene Steward-Clark; Heather Tatum; Andrew Vogan; Briana Zellner; Jan Drobeniuc; Matthew R P Sapiano; Fiona Havers; Carrie Reed; Susan Gerber; Natalie J Thornburg; Susan L Stramer
Journal:  Clin Infect Dis       Date:  2021-06-15       Impact factor: 9.079

4.  Evidence of SARS-CoV-2 RNA in an Oropharyngeal Swab Specimen, Milan, Italy, Early December 2019.

Authors:  Antonella Amendola; Silvia Bianchi; Maria Gori; Daniela Colzani; Marta Canuti; Elisa Borghi; Mario C Raviglione; Gian Vincenzo Zuccotti; Elisabetta Tanzi
Journal:  Emerg Infect Dis       Date:  2020-12-08       Impact factor: 6.883

5.  SARS-CoV-2 was already spreading in France in late December 2019.

Authors:  A Deslandes; V Berti; Y Tandjaoui-Lambotte; Chakib Alloui; E Carbonnelle; J R Zahar; S Brichler; Yves Cohen
Journal:  Int J Antimicrob Agents       Date:  2020-05-03       Impact factor: 5.283

6.  Phylogenetic network analysis of SARS-CoV-2 genomes.

Authors:  Peter Forster; Lucy Forster; Colin Renfrew; Michael Forster
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-08       Impact factor: 11.205

7.  Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant.

Authors:  Leonid Yurkovetskiy; Xue Wang; Kristen E Pascal; Christopher Tomkins-Tinch; Thomas P Nyalile; Yetao Wang; Alina Baum; William E Diehl; Ann Dauphin; Claudia Carbone; Kristen Veinotte; Shawn B Egri; Stephen F Schaffner; Jacob E Lemieux; James B Munro; Ashique Rafique; Abhi Barve; Pardis C Sabeti; Christos A Kyratsous; Natalya V Dudkina; Kuang Shen; Jeremy Luban
Journal:  Cell       Date:  2020-09-15       Impact factor: 66.850

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