| Literature DB >> 35497200 |
Fakhrossadat Mohammadi1, Marzieh Moeeni1, Chengnan Li2, Rabah Boukherroub2, Sabine Szunerits2.
Abstract
In recent years, numerous studies have focused on the understanding of the interactions between proteins and nanoparticles (NPs). In this work, we focus on the interaction of bovine α-lactalbumin (BLA) with differently coated magnetic nanoparticles (MP): as formed MP, MPs stabilized with dopamine (MPdopamine) and nanoparticles coated with cellulose (MPcellulose). The influence of the coating on the nanoparticle-protein interaction is revealed by a set of different experiments. The binding affinity (K A) between BLA and these three structures was found to vary from 105 M-1 (for MPs) to 1011 M-1 (MPcellulose). The orientation of BLA and the involvement of amino acid residues in the process of interaction with magnetic nanoparticles were identified by molecular docking studies. In addition, circular dichroism spectra revealed that the conformation of BLA was conserved upon interaction with the magnetic nanoparticles. This journal is © The Royal Society of Chemistry.Entities:
Year: 2020 PMID: 35497200 PMCID: PMC9050155 DOI: 10.1039/c9ra09045b
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Fig. 1Characterization of 2-nitrodopamine and cellulose coated magnetic particles: (A) FTIR spectra; (B) Fe 2p high resolution XPS spectra; (C) Transmission electron microscopy (TEM) and HRTEM analysis, (D) zero-field-cooled (ZFC) magnetization curves with an applied field of 80 Oe and hysteresis curves at 300 K for naked MP (grey), MPdopamine (black) and MPcellulose (blue).
Physico-chemical characteristics of the magnetic particles
| Particles | C 1s | O 1s | N 1s | Fe 2p | Zeta potential/mV | Size/nm |
|---|---|---|---|---|---|---|
| MPdopamine | 24.2 | 59.3 | 3.3 | 13.2 | +20.2 ± 2.5 | 8 ± 2 |
| MPcellulose | 19.6 | 65.3 | — | 15.2 | −22.9 ± 2.3 | 14 ± 3 |
Fig. 2Determination of interaction strength between BLA and different magnetic particles: MP, MPdopamine, MPcellulose: (A) fluorescence quenching of BLA (2.5 μM) by (i) MPdopamine, (ii) MPcellulose and (iii) naked magnetic particles (MP) upon excitation at λex = 280 nm in the absence and presence of increasing concentration of particles (0–0.015 nM); (B) the Stern–Volmer plots for (i) MPdopamine, (ii) MPcellulose and (iii) naked magnetic particles at different temperatures; (C) plots of ln(F0 − F/F) versus [particles] of BLA quenched by (i) MPdopamine, (ii) MPcellulose and (iii) magnetic particles; (D) van't Hoff plot for (i) MPdopamine and MPcellulose, (ii) naked magnetic particles.
Change in Stern–Volmer quenching constant (KSV), bimolecular quenching rate constant (kq), the number of binding sites n, and binding constant (KA) between magnetic particles and BLA = 2.5 μM at different temperatures
| Particle |
|
|
|
|
|
|---|---|---|---|---|---|
| MPcellulose | 293 | (4.50 ± 0.04) × 1010 | (4.50 ± 0.04) × 1019 | 1.12 ± 0.02 | (9.68 ± 5.01) × 1011 |
| 298 | (3.64 ± 0.07) × 1010 | (3.64 ± 0.07) × 1019 | 1.04 ± 0.02 | (1.18 ± 0.70) × 1011 | |
| 303 | (3.60 ± 0.06) × 1010 | (3.60 ± 0.06) × 1019 | 0.85 ± 0.02 | (7.91 ± 3.62) × 108 | |
| MPdopamine | 293 | (1.84 ± 0.03) × 1010 | (1.84 ± 0.03) × 1019 | 1.05 ± 0.02 | (8.03 ± 4.39) × 1010 |
| 298 | (2.29 ± 0.02) × 1010 | (2.29 ± 0.02) × 1019 | 0.70 ± 0.02 | (1.43 ± 0.73) × 107 | |
| 303 | (2.62 ± 0.03) × 1010 | (2.62 ± 0.03) × 1019 | 0.67 ± 0.02 | (6.41 ± 3.80) × 106 | |
| MP | 298 | (3.01 ± 0.07) × 1010 | (3.01 ± 0.07) × 1019 | 0.58 ± 0.02 | (8.29 ± 3.81) × 105 |
| 303 | (1.97 ± 0.05) × 1010 | (1.97 ± 0.05) × 1019 | 0.64 ± 0.03 | (2.01 ± 1.50) × 106 | |
| 308 | (2.71 ± 0.07) × 1010 | (2.71 ± 0.07) × 1019 | 0.69 ± 0.01 | (1.14 ± 3.33) × 107 |
Binding constants of different proteins to magnetic nanostructures
| Protein | MP |
| Ref. |
|---|---|---|---|
| Bovine serum albumin | Fe3O4 nanoparticles stabilized by SDBS | 2.40 × 108 |
|
| Immunoglobulin | Fe3O4 nanoparticles stabilized by PEG | 2.61 × 106 |
|
| Bovine serum albumin | Dendrimer coated magnetite nanoparticles | 21.1 × 108 |
|
Thermodynamic parameters of the interaction of magnetic nanoparticles with BLA (2.5 μM) at 298 K
| Particle | Δ | Δ | Δ |
|---|---|---|---|
| MPcellulose | −124 ± 1.1 | −369 ± 3.8 | −14 ± 4.0 |
| MPdopamine | −166 ± 1.2 | −521 ± 3.2 | −11 ± 4.5 |
| MP | 47 ± 1.0 | 186 ± 2.9 | −8 ± 3.9 |
Langmuir and Freundlich isotherm constants for adsorption of BLA on magnetic nanoparticles as determined from Fig. S1
| Particles | Isotherm | Parameters | Values |
|---|---|---|---|
| MPcellulose | Langmuir |
| 833 ± 23.31 |
|
| 12 ± 1.04 | ||
|
| 0.48 ± 0.01 | ||
|
| 0.99 | ||
| Freundlich |
| 728 ± 21 | |
| 1/ | 0.22 ± 0.02 | ||
|
| 0.98 | ||
| MPdopamine | Langmuir |
| 714 ± 13.12 |
|
| 14 ± 0.96 | ||
|
| 0.15 ± 0.03 | ||
|
| 0.99 | ||
| Freundlich |
| 658 ± 35 | |
| 1/ | 0.18 ± 0.01 | ||
|
| 0.97 | ||
| MP | Langmuir |
| 666 ± 7.51 |
|
| 7.5 ± 0.21 | ||
|
| 0.17 ± 0.02 | ||
|
| 0.99 | ||
| Freundlich |
| 577 ± 23 | |
| 1/ | 0.19 ± 0.02 | ||
|
| 0.93 |
Fig. 3Emission and absorption spectra of (a) MPcellulose/BLA, (b) MPdopamine/BLA and (c) MP/BLA, λex = 280 nm.
Förster's theory: determination of Förster critical distance R0, the distance between the donor and acceptor r, J a factor describing the overlapping between the emission spectrum of the donor and the absorption spectrum
| Förster parameter | MPcellulose | MPdopamine | MP |
|---|---|---|---|
|
| 4.5–5.5 | 3.7–4.5 | 4.5–5.4 |
|
| 4.2–5.1 | 4.6–5.5 | 4.9–5.9 |
|
| 2.42 × 10−13 | 7.73 × 10−14 | 2.51 × 10−13 |
|
| 0.4099 | 0.2197 | 0.3776 |
Percentage of secondary structural content of BLA in the absence and presence of magnetic particles
| Secondary structure | BLA | MPcellulose/BLA | MPdopamine/BLA | MP/BLA |
|---|---|---|---|---|
| α-Helix | 22.6 | 24 | 22.2 | 23.1 |
| β-Sheet | 25.2 | 25 | 26.0 | 25.4 |
| β-Turn | 17.3 | 17.6 | 17.5 | 17.5 |
| Random coil | 34.8 | 33.4 | 33.9 | 33.7 |
Fig. 4The effect of the magnetic nanoparticles on the synchronous fluorescence of BLA at Δλ = 15 and Δλ = 60. [BLA] = 2.5 μM, [ligands] = 0–30 μM.
Fig. 5Cell viability of MP, MPcellulose, and MPdopamine alone (a) and after incubation with BLA (b).
Fig. 6The calculated distances between MP-sheet and four tryptophans in BLA rendered by PyMol.
The total energy and the interface amino acids of various orientations of MPcellulose/BLA interaction
| Docked pose | Total energy (a.u.) | Amino acids |
|---|---|---|
| 1 | −668.66 | Asp14, Leu15, Lys16, Gly17, Tyr18, Gly19, Gly20, Val21, Ser22, Leu23, pro24, Glu25, Lys93, Lys94, Ile95, Leu96, Asp97, Lys98, Val99, Gly103, Ile101, Asn102, Tyr103, His107, CYs111, Ser112, Leu115, Asp116, |
| 2 | −571.76 | Lys16, Gly17, Tyr18, Gly19, Gly20, Val21, Ser22, Lys93, Lys94, Ile95, Leu96, Asp97, Lys98, Val99, Gly103, Ile101, Asn102 |
| 3 | −559.92 | Asp14, Leu15, Lys16, Gly17, Tyr18, Gly19, Gly20, Val21, Ser22, Leu23, pro24, Glu25, Lys93, Lys94, Ile95, Tyr103, His107, CYs111, Ser112, Leu115, Asp116, |
| 4 | −545.77 | Lys16, Gly17, Tyr18, Gly19, Gly20, Val21, Ser22, Leu23, pro24, Glu25, Lys93, Lys94, Ile95, Tyr103, His107, CYs111, Ser112, Leu115, Asp116, |
| 5 | −538.67 | pro24, Glu25, Lys93, Lys94, Ile95, Tyr103, His107, CYs111, Ser112, Leu115, Asp116, |
The parameters of the five stable MPcellulose/BLA complex, as obtained by molecular docking. The calculated distances between the interface interactive amino acids and the MPcellulose-sheet and the types of bindings which contributed in the binding site
| Docked pose | Amino acids | Distances (Å) | Category | Type |
|---|---|---|---|---|
| Pose 1 | Lys16 | 2.36 | Hydrogen bond | Conventional |
| Tyr18 | 2.74 | Hydrogen bond | Conventional | |
| Le115 | 3.03 | Hydrogen bond | Conventional | |
| Asp14 | 2.35 | Hydrogen bond | Conventional | |
| Glu25 | 2.73 | Hydrogen bond | Conventional | |
| Gly19 | 2.66 | Hydrogen bond | Conventional | |
| Gly19 | 2.84 | Hydrogen bond | Carbon | |
| Gly19 | 2.16 | Hydrogen bond | Carbon | |
| Sr112 | 2.38 | Hydrogen bond | Carbon | |
| Lys16 | 5.18 | Hydrophobic | Alkyl | |
| Val21 | 4.61 | Hydrophobic | Alkyl | |
| Ile101 | 4.31 | Hydrophobic | Alkyl | |
| Tyr18 | 4.97 | Hydrophobic | Pi-alkyl | |
| His32 | 2.77 | Hydrogen bond | Conventional | |
| Pose 2 | Asn45 | 2.59 | Hydrogen bond | Conventional |
| Pose 3 | Leu105 | 2.66 | Hydrogen bond | Conventional |
| Pose 4 | Lys108 | 2.46 | Hydrogen bond | Conventional |
| Asp97 | 2.99 | Hydrogen bond | Carbon | |
| His107 | 3.77 | Hydrogen bond | Carbon | |
| Asn102 | 2.16 | Hydrogen bond | Conventional | |
| Pose 5 | Ser112 | 2.15 | Hydrogen bond | Conventional |
| Lys114 | 1.89 | Hydrogen bond | Conventional |