| Literature DB >> 35494638 |
Zile Wang1, Ling Chen2, Pimiao Zheng1,3, Jianyi Wang1, Zhenhui Ren1, Huixia Zhang1, Liang Zhang1, Haiyang Jiang1.
Abstract
Alternariol (AOH) and alternariol monomethyl ether (AME) are two main Alternaria mycotoxins that endanger human health. In this study, a single-chain antibody fragment (scFv) capable of equivalently and specifically recognizing AOH and AME was first expressed, and its equivalent recognition mechanism was discussed. According to molecular docking and dynamic simulation, the C9 site, which was always exposed outside the binding cavity, made the structural differences between AOH and AME negligible. Due to the high similarity of structures, AOH and AME interacted with almost the same amino acids on the scFv; thus, the same interaction mode and interaction force were produced. This was considered to be the most critical reason for the equivalent recognition. Thus, the exposure of common structures was considered a potential strategy to obtain the equivalent recognition antibodies, and C9 was considered the key site in the process of hapten modification. These results laid a theoretical foundation for further research on antibodies against Alternaria mycotoxins. It could promote the rapid detection of AOH and AME in food and provide a new idea for targeted preparation of antibodies that could recognize multiple hazards with similar structures.Entities:
Keywords: alternariol; alternariol monomethyl ether; molecular interaction; recognition mechanism; single-chain antibody fragment
Year: 2022 PMID: 35494638 PMCID: PMC9046909 DOI: 10.3389/fchem.2022.871659
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.545
FIGURE 1Structure of three main Alternaria alternata mycotoxins. (A) Alternariol. (B) Alternariol monomethyl ether. (C) Altenuene.
FIGURE 2Structural analysis of AOH and AME. (A) Molecular overlay (purple represents AOH and yellow represents AME). (B) Molecular scale of AOH and AME. (C) ESP of AOH and AME. (D) Mulliken charge of AOH and AME.
FIGURE 3Optimized spatial structure model of scFv (yellow highlights represent the distribution of CDR regions and red balls represent active cavity located in CDR regions).
FIGURE 4Molecular docking model of AOH/AME and scFv.
FIGURE 5Interaction between AOH/AME and scFv. (A) Hydrogen bond donors and acceptors around the binding cavity (green represents the receptor and purple represents the donor.) (B) Hydrophobicity around the binding cavity (blue represents hydrophilicity and brown represents hydrophobicity). (C) Charge around the binding cavity (blue represents positive electricity and red represents negative electricity). (D) The acid–base around the binding cavity (blue represents basic and red represents acidic). (E) Two-dimensional diagram of interactions between scFv and AOH. (F) Two-dimensional diagram of interactions between scFv and AME (green represents hydrogen bond interaction, cyan represents π-lone pair interaction, and pink represents alkyl interaction).
Existing methods for preparing antibodies for AOH and AME.
| Antibody type | Compound | Modification method | Modification site | Cross-reaction rate (%) | |
|---|---|---|---|---|---|
| mAb | AOH | Mannich | C3 or C7 hydroxyl | AOH (100) |
|
| AME (0.9) | |||||
| pAb | AOH | AOH (100) | |||
| AME (<0.5) | |||||
| ALT (<0.5) | |||||
| mAb | AME | Carboxyl derivative modification | C3 hydroxyl | AME (100) |
|
| AOH (2.9) | |||||
| mAb | AOH | CDI | C3 or C7 or C9 hydroxyl | AOH (100) |
|
| AME (24.6) | |||||
| mAb | AOH | Alkylation reaction | C3 or C7 or C9 hydroxyl | AOH (100) |
|
| AME (97) |