Literature DB >> 35493078

Editorial: Waken the Silent Majority: Principles and Pathogenic Significance of Non-Acetyl Acylation and Other Understudied Post-Translational Modifications.

Fangliang Zhang1,2.   

Abstract

Entities:  

Keywords:  Ate1; arginylation; arginyltransferase; evolution; posttranslational modification; terminal modification

Year:  2022        PMID: 35493078      PMCID: PMC9043806          DOI: 10.3389/fcell.2022.896324

Source DB:  PubMed          Journal:  Front Cell Dev Biol        ISSN: 2296-634X


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Arginylation, the ribosome-independent transfer of arginine to protein/peptide, was discovered nearly six decades ago (Kaji et al., 1963; Kaji, 1968). Despite the long history, this posttranslational modification (PTM) remains underexplored. This is hindered by the fact that the study of arginylation is currently only conducted by a few dozen of research groups with a limited number of relevant publications each year. In a certain sense, the lack of understanding of arginylation even leads to a false impression that this phenomenon may be unimportant. However, arginylation is an exceptionally widespread process that has been found in all eukaryotes examined (Graciet et al., 2006; Graciet et al., 2009; Licausi et al., 2011; Van and Smith, 2020). Such a conservation would be unimaginable if this PTM did does not play some important physiological role. In this Research Topic “Waken the Silent Majority: Principles and Pathogenic Significance of Non-Acetyl Acylation and other Understudied Post-Translational Modifications,” several papers directly relevant to the intriguing phenomenon of arginylation are included to showcase the diverse functions of this PTM and the evolutionary root of arginyltransferase1 (ATE1) (Balzi et al., 1990), the main enzyme catalyzing arginylation in most eukaryotes (Kato and Nozawa, 1984). In the review paper “Post-translational Modifications of the Protein Termini” by Chen and Kashina, a concise and balanced summary of many different types of PTMs on both the N- and C-termini of proteins are presented for their biochemical mechanisms and potential physiological roles. These include arginylation, which is mostly an N-terminal modification. In the original research paper “Arginylation regulates G-protein signaling present in the retina” by Fina et al., the researchers found that several components in the G-protein signaling complexes in retina are subjected to arginylation, which may in turn affect the retinal function. In another research paper “Protein Posttranslational Signatures Identified in COVID-19 Patient Plasma” by Vedula et al., researchers used comprehensive proteomic approaches and identified significant alterations of arginylation (and several other PTM) signatures in the plasma of COVID-19 patients. While the exact physiological meaning of these changes still awaits further clarification, this finding nevertheless highlights the potential involvement of arginylation in virus-induced pathological conditions. Finally, new clues for interpreting the role of the arginylation enzyme ATE1 was provided in the original research “Regulation of Mitochondrial Respiratory Chain Complex Levels, Organization, and Function by Arginyltransferase 1” by Jiang et al. (contributed by my own research group). In this study, a small fraction of ATE1 was found located inside mitochondria and is essential for the proper function of mitochondria in respiration. Intriguingly, homologues of eukaryotic ATE1 can be traced back to alpha-proteobacteria, relatives of the ancient ancestor of mitochondria. This connection between ATE1 and mitochondria may constitute a new angle for understanding the diverse functions of ATE1 in cellular metabolism (Brower and Varshavsky, 2009; Zhang et al., 2015), stress response (Wiley et al., 2020; Kumar et al., 2016; Deka et al., 2016), and oxygen sensing (Moorthy et al., 2022). Overall, while arginylation is still a poorly understood process, the papers presented in this Research Topic will help to shorten the gap. Hopefully with more research and further advancements of techniques including proteomic study tools, a more comprehensive picture of arginylation will soon be on the horizon.
  14 in total

1.  A SOLUBLE AMINO ACID-INCORPORATING SYSTEM FROM RAT LIVER.

Authors:  H KAJI; G D NOVELLI; A KAJI
Journal:  Biochim Biophys Acta       Date:  1963-11-22

2.  Aminoacyl-transferases and the N-end rule pathway of prokaryotic/eukaryotic specificity in a human pathogen.

Authors:  Emmanuelle Graciet; Rong-Gui Hu; Konstantin Piatkov; Joon Haeng Rhee; Erich M Schwarz; Alexander Varshavsky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

3.  Further studies on the soluble amino acid incorporating system from rat liver.

Authors:  H Kaji
Journal:  Biochemistry       Date:  1968-11       Impact factor: 3.162

4.  Complete purification of arginyl-tRNA:protein arginyltransferase from hog kidney and production of its antibody.

Authors:  M Kato; Y Nozawa
Journal:  Anal Biochem       Date:  1984-12       Impact factor: 3.365

5.  Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.

Authors:  Francesco Licausi; Monika Kosmacz; Daan A Weits; Beatrice Giuntoli; Federico M Giorgi; Laurentius A C J Voesenek; Pierdomenico Perata; Joost T van Dongen
Journal:  Nature       Date:  2011-10-23       Impact factor: 49.962

6.  The evolutionarily conserved arginyltransferase 1 mediates a pVHL-independent oxygen-sensing pathway in mammalian cells.

Authors:  Balaji T Moorthy; Chunhua Jiang; Devang M Patel; Yuguang Ban; Corin R O'Shea; Akhilesh Kumar; Tan Yuan; Michael D Birnbaum; Aldrin V Gomes; Xi Chen; Flavia Fontanesi; Theodore J Lampidis; Antoni Barrientos; Fangliang Zhang
Journal:  Dev Cell       Date:  2022-03-04       Impact factor: 12.270

7.  The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf development.

Authors:  Emmanuelle Graciet; Franziska Walter; Diarmuid S Ó'Maoiléidigh; Stephan Pollmann; Elliot M Meyerowitz; Alexander Varshavsky; Frank Wellmer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-20       Impact factor: 11.205

8.  Arginylation regulates purine nucleotide biosynthesis by enhancing the activity of phosphoribosyl pyrophosphate synthase.

Authors:  Fangliang Zhang; Devang M Patel; Kristen Colavita; Irina Rodionova; Brian Buckley; David A Scott; Akhilesh Kumar; Svetlana A Shabalina; Sougata Saha; Mikhail Chernov; Andrei L Osterman; Anna Kashina
Journal:  Nat Commun       Date:  2015-07-15       Impact factor: 14.919

9.  Posttranslational arginylation enzyme Ate1 affects DNA mutagenesis by regulating stress response.

Authors:  Akhilesh Kumar; Michael D Birnbaum; Devang M Patel; William M Morgan; Jayanti Singh; Antoni Barrientos; Fangliang Zhang
Journal:  Cell Death Dis       Date:  2016-09-29       Impact factor: 8.469

10.  Protein arginylation regulates cellular stress response by stabilizing HSP70 and HSP40 transcripts.

Authors:  Kamalakshi Deka; Archana Singh; Surajit Chakraborty; Rupak Mukhopadhyay; Sougata Saha
Journal:  Cell Death Discov       Date:  2016-10-03
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