| Literature DB >> 35492636 |
Pablo Castro-Latorre1, Sebastián Miranda-Rojas2, Fernando Mendizabal1.
Abstract
Here we aim to explore the nature of the forces governing the adsorption of gold-phthalocyanine on gold substrates. For this, we designed computational models of metal-free phthalocyanine and gold-phthalocyanine deposited over a gold metallic surface represented by cluster models of different sizes and geometries. Thereby, we were able to determine the role of the metal center and of the size of the substrate in the interaction process. For this purpose, we worked within the framework provided by density functional theory, were the inclusion of the semi-empirical correction of the dispersion forces of Grimme's group was indispensable. It has been shown that the interaction between molecules and surfaces is ruled by van der Waals attractive forces, which determine the stabilization of the studied systems and their geometric properties. Their contribution was characterized by energy decomposition analysis and through the visualization of the dispersion interactions by means of the NCI methodology. Moreover, calculations of Density of States (DOS) showed that the molecule-surface system displays a metal-organic interface evidenced by changes in their electronic structure, in agreement with a charge transfer process found to take place between the interacting parts. This journal is © The Royal Society of Chemistry.Entities:
Year: 2020 PMID: 35492636 PMCID: PMC9049280 DOI: 10.1039/c9ra07959a
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Fig. 1Schematic representation of the phthalocyanine macrocycle. (a) Free phthalocyanine (H2Pc) and (b) phthalocyanine with gold as metal center (AuPc) (color code for the atoms type: C = gray, N = blue, H = white, Au = yellow).
Fig. 2Structure of the interaction mode of AuPc with model1 to model4. In orange are the Au atoms with which the metal center interacts.
Some selected geometrical parameters (distances in angstroms and angles in degrees)
| System | Method | Au–Au(1) | Au–Au(2) | Au–M–Au | Mol.–surf. |
|---|---|---|---|---|---|
| AuPc-model1 | PBE | 3.86 | 3.90 | 43.7° | 3.34 |
| PBE-D3 | 3.54 | 3.60 | 46.8° | 3.18 | |
| H2Pc-model1 | PBE | 3.74 | 3.80 | 3.46 | |
| PBE-D3 | 3.45 | 3.53 | 3.32 | ||
| AuPc-model2 | PBE | 3.81 | 4.04 | 43.1° | 3.60 |
| PBE-D3 | 3.52 | 3.77 | 45.8° | 3.30 | |
| H2Pc-model2 | PBE | 3.71 | 3.97 | 3.53 | |
| PBE-D3 | 3.32 | 3.56 | 3.27 | ||
| AuPc-model3 | PBE-D3 | 3.61 | 3.63 | 47.0° | 3.34 |
| H2Pc-model3 | PBE-D3 | 3.53 | 3.54 | 3.27 | |
| AuPc-model4 | PBE-D3 | 3.54 | 3.73 | 46.6° | 3.37 |
| H2Pc-model4 | PBE-D3 | 3.38 | 3.43 | 3.30 |
Closest Au–Ausurf. distance.
Second closest Au–Ausurf. distance. In the case of H2Pc, this magnitude is the distance between the H atoms in the center of the molecule and the closest Au atoms in the surface.
Distance from the surface's plane to the molecule's plane.
Interaction energies (ΔEint) and energy decomposition analysis for the complexes formed between AuPc and H2Pc with Au58. The energies are corrected for BSSE (in cal mol−1)
| System | Δ | Δ | Δ | Δ | Δ | Δ |
|---|---|---|---|---|---|---|
| AuPc-model2 | −89.0 | 50.8 | 0.0 | −86.2 | −76.4 | 22.8 |
| H2Pc-model2 | −71.7 | 114.1 | 0.0 | −83.3 | −79.4 | −23.2 |
| AuPc-model3 | −101.3 | 26.4 | −0.1 | −88.5 | −75.0 | 35.9 |
| H2Pc-model3 | −76.8 | 98.9 | −6.3 | −86.7 | −76.7 | −6.0 |
| AuPc-model4 | −100.1 | 24.0 | −0.1 | −89.4 | −74.9 | 40.3 |
| H2Pc-model4 | −76.6 | 104.6 | −0.1 | −87.8 | −76.2 | −17.1 |
Natural Population Atomic (NPA) analysis of the substrate (Au-cluster) and the ligands (AuPc or H2Pc)
| System | Method | Au-cluster | Au | Pc |
|---|---|---|---|---|
| AuPc | PBE-D3 | 1.21 | −1.21 | |
| AuPc-model2 | PBE-D3 | −0.71 | 1.27 | −0.57 |
| H2Pc-model2 | PBE-D3 | −0.01 | 0.01 | |
| AuPc-model3 | PBE-D3 | −0.88 | 1.27 | −0.38 |
| H2Pc-model3 | PBE-D3 | −0.10 | 0.10 | |
| AuPc-model4 | PBE-D3 | −0.87 | 1.27 | −0.40 |
| H2Pc-model4 | PBE-D3 | −0.04 | 0.04 |
Fragmental electronic chemical potential (μ) of the ligand (AuPc or H2Pc) and the gold substrate (Au58). The Δμ was calculated from the difference between the μ of the substrate and the ligand
| System | Method |
|
| Δ |
|---|---|---|---|---|
| AuPc-model2 | PBE-D3 | −5.11 | −3.71 | −1.40 |
| H2Pc-model2 | PBE-D3 | −5.10 | −4.30 | −0.80 |
| AuPc-model3 | PBE-D3 | −5.41 | −3.70 | −1.71 |
| H2Pc-model3 | PBE-D3 | −5.41 | −4.29 | −1.12 |
| AuPc-model4 | PBE-D3 | −5.29 | −3.70 | −1.59 |
| H2Pc-model4 | PBE-D3 | −5.29 | −4.30 | −0.99 |
Fig. 3NCI index surface representation (isovalue = 0.5) of the (a) H2Pc–Au58 and (b) AuPc–Au58 complexes.
Fig. 4Density of States (DOS) diagram for the AuPc–Au58 complex.