| Literature DB >> 35492276 |
Kenechukwu J Ifeanyieze1, Bikimi B Ayiya2, Obinna C Okpareke1, Tatiana V Groutso3, Jonnie N Asegbeloyin1.
Abstract
The title compound, C18H14N2O3S, crystallizes in the ortho-rhom-bic crystal system and Pbca space group. The thio-urea chromophore is planar to an r.m.s deviation of 0.032 Å with the thiol-ate sulfur atom being the most deviated. Bifurcated N-H⋯O intra-molecular hydrogen bonds result in an S(6) supra-molecular synthon. In the crystal, mol-ecules are linked by N-H⋯O inter-molecular hydrogen-bonding inter-actions and stabilized by C-H⋯π and π-π inter-actions. Hirshfeld surface analysis and fingerprint plot indicate the H⋯H inter-molecular contacts as the highest contributor to the overall surface contacts (38%) and this is supported by the high dispersive and electrostatic inter-action energies. © Ifeanyieze et al. 2022.Entities:
Keywords: Hirshfeld surface; anthraquinone; computational study; crystal structure; thiourea
Year: 2022 PMID: 35492276 PMCID: PMC8983977 DOI: 10.1107/S2056989022003127
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the molecular structure of the title compound, with the atom labeling. Displacement ellipsoids are drawn at the 30% probability level. Intramolecular hydrogen bonds are shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O1 | 0.86 | 1.98 | 2.685 (2) | 138 |
| N1—H1⋯O2 | 0.86 | 2.14 | 2.652 (2) | 117 |
| N2—H2⋯O3i | 0.86 | 2.19 | 3.038 (2) | 167 |
| C3—H3 | 0.97 | 2.52 | 3.414 (3) | 153 |
| C15—H15⋯S1iii | 0.93 | 2.87 | 3.553 (2) | 131 |
| C17—H17⋯O2iv | 0.93 | 2.47 | 3.280 (3) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2(a) Supramolecular 1-D hydrogen-bonding interactions along c-axis direction of the title compound and (b) molecular aggregation structure of the crystal along the ab plane, showing repeating units of pairwise π–π stacking interactions.
Figure 3Hirshfeld surfaces mapped over (a), (b) and (c) d norm and (d) shape-index showing intermolecular atom-to-atom and π–π interactions in the crystal structure.
Figure 4The overall and individual two-dimensional fingerprint plots for intermolecular contacts in the crystal structure.
Percentage contributions of intermolecular contacts to the Hirshfeld surface
| Contact | Percentage contribution |
|---|---|
| H⋯H | 38.0 |
| H⋯O/O⋯H | 19.5 |
| C⋯H/H⋯C | 13.0 |
| C⋯C | 26.3 |
| H⋯H | 11.2 |
| S⋯H/H⋯S | 10.8 |
| C⋯O/O⋯C | 2.7 |
| N⋯H/H⋯N | 1.4 |
| C⋯O/O⋯C | 1.3 |
A summary of the calculated interaction energies for the title compound (kJ mol−1)
Please define N and R
|
| Symop |
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|
| 1 |
| 14.92 | 0.6 | −0.2 | −2.7 | 0.4 | −1.6 |
| 0 | - | 6.11 | −24.1 | −4.8 | −85.9 | 77.8 | −55.8 |
| 0 | - | 11.23 | −33.2 | −7.5 | −17.8 | 38.4 | −32.3 |
| 1 | - | 7.82 | −17.7 | −6.2 | −44.9 | 42.1 | −36.4 |
| 0 | - | 9.48 | −0.7 | −1.1 | −13.3 | 8.2 | −8.0 |
| 0 |
| 8.88 | −10.8 | −3.0 | −17.6 | 14.2 | −20.1 |
| 0 |
| 13.01 | −0.0 | −0.5 | −9.9 | 3.6 | −6.8 |
| 1 | - | 12.22 | −0.1 | −0.7 | −10.2 | 8.5 | −4.2 |
| 0 | - | 5.85 | −11.3 | −1.1 | −69.5 | 42.1 | −47.3 |
Figure 5Perspective views of the energy frameworks of the title compound showing (a) electrostatic, (b) dispersion, (c) total energy and (d) annotated total energy. The cylindrical radius is proportional to the relative strength of the corresponding energies and they were adjusted to the same scale factor of 100 with a cut-off value of 5 kJmol−1 within 2 x 2 x 2 unit cells.
Experimental details
| Crystal data | |
| Chemical formula | C18H14N2O3S |
|
| 338.37 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 7.3003 (1), 18.9557 (3), 21.9045 (3) |
|
| 3031.19 (8) |
|
| 8 |
| Radiation type | Cu |
| μ (mm−1) | 2.07 |
| Crystal size (mm) | 0.18 × 0.12 × 0.08 |
| Data collection | |
| Diffractometer | XtaLAB Synergy, Dualflex, Pilatus 200K |
| Absorption correction | Multi-scan ( |
|
| 0.869, 1.000 |
| No. of measured, independent and observed [ | 18022, 3013, 2816 |
|
| 0.034 |
| (sin θ/λ)max (Å−1) | 0.624 |
| Refinement | |
|
| 0.048, 0.144, 1.13 |
| No. of reflections | 3013 |
| No. of parameters | 218 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.67, −0.64 |
Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), and OLEX2 (Dolomanov et al., 2009 ▸).
| C18H14N2O3S | |
| Cu | |
| Orthorhombic, | Cell parameters from 10712 reflections |
| θ = 4.0–74.2° | |
| µ = 2.07 mm−1 | |
| Block, clear colourless | |
| 0.18 × 0.12 × 0.08 mm | |
| XtaLAB Synergy, Dualflex, Pilatus 200K diffractometer | 3013 independent reflections |
| Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source | 2816 reflections with |
| Mirror monochromator | |
| ω scans | θmax = 74.3°, θmin = 4.0° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018) | |
| 18022 measured reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3013 reflections | Δρmax = 0.67 e Å−3 |
| 218 parameters | Δρmin = −0.64 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.72292 (8) | 0.44246 (3) | 0.25812 (3) | 0.02439 (19) | |
| O2 | 0.7597 (2) | 0.64440 (8) | 0.41206 (7) | 0.0228 (4) | |
| O3 | 0.6789 (2) | 0.46534 (8) | 0.60029 (7) | 0.0244 (4) | |
| O1 | 0.9337 (3) | 0.66694 (9) | 0.29076 (7) | 0.0287 (4) | |
| N1 | 0.8521 (3) | 0.53993 (9) | 0.33766 (8) | 0.0195 (4) | |
| H1 | 0.889018 | 0.582673 | 0.342345 | 0.023* | |
| N2 | 0.8371 (3) | 0.57086 (10) | 0.23530 (8) | 0.0223 (4) | |
| H2 | 0.815839 | 0.557602 | 0.198428 | 0.027* | |
| C12 | 0.6591 (3) | 0.62664 (11) | 0.51256 (9) | 0.0171 (4) | |
| C5 | 0.8416 (3) | 0.49780 (11) | 0.39044 (9) | 0.0172 (4) | |
| C13 | 0.6390 (3) | 0.58121 (11) | 0.56248 (9) | 0.0169 (4) | |
| C10 | 0.7788 (3) | 0.52594 (11) | 0.44627 (9) | 0.0154 (4) | |
| C11 | 0.7332 (3) | 0.60171 (11) | 0.45330 (9) | 0.0163 (4) | |
| C9 | 0.7647 (3) | 0.48093 (11) | 0.49745 (9) | 0.0159 (4) | |
| C6 | 0.9019 (3) | 0.42781 (11) | 0.38807 (10) | 0.0200 (5) | |
| H6 | 0.951456 | 0.410016 | 0.352119 | 0.024* | |
| C7 | 0.8881 (3) | 0.38493 (11) | 0.43898 (10) | 0.0208 (5) | |
| H7 | 0.927247 | 0.338318 | 0.436683 | 0.025* | |
| C15 | 0.5707 (3) | 0.60672 (12) | 0.61753 (10) | 0.0220 (5) | |
| H15 | 0.556732 | 0.576471 | 0.650632 | 0.026* | |
| C8 | 0.8170 (3) | 0.41032 (11) | 0.49330 (10) | 0.0179 (4) | |
| H8 | 0.804179 | 0.380524 | 0.526757 | 0.022* | |
| C14 | 0.6936 (3) | 0.50620 (11) | 0.55722 (9) | 0.0172 (4) | |
| C18 | 0.6119 (3) | 0.69770 (11) | 0.51866 (10) | 0.0223 (5) | |
| H18 | 0.625588 | 0.728232 | 0.485743 | 0.027* | |
| C2 | 0.8937 (3) | 0.64023 (12) | 0.24157 (10) | 0.0230 (5) | |
| C17 | 0.5446 (3) | 0.72278 (13) | 0.57380 (11) | 0.0262 (5) | |
| H17 | 0.513700 | 0.770149 | 0.577811 | 0.031* | |
| C1 | 0.8093 (3) | 0.51926 (12) | 0.27974 (10) | 0.0203 (5) | |
| C16 | 0.5234 (3) | 0.67731 (13) | 0.62298 (11) | 0.0254 (5) | |
| H16 | 0.477295 | 0.694251 | 0.659739 | 0.031* | |
| C3 | 0.8997 (4) | 0.68035 (13) | 0.18245 (11) | 0.0298 (6) | |
| H3A | 0.777627 | 0.681545 | 0.164961 | 0.036* | |
| H3B | 0.978880 | 0.655647 | 0.154039 | 0.036* | |
| C4 | 0.9688 (5) | 0.75570 (14) | 0.19012 (13) | 0.0380 (6) | |
| H4A | 0.965684 | 0.779397 | 0.151405 | 0.057* | |
| H4B | 1.092260 | 0.754860 | 0.205179 | 0.057* | |
| H4C | 0.891940 | 0.780289 | 0.218617 | 0.057* |
| S1 | 0.0304 (3) | 0.0229 (3) | 0.0198 (3) | −0.0057 (2) | 0.0008 (2) | −0.0018 (2) |
| O2 | 0.0358 (9) | 0.0158 (7) | 0.0170 (7) | −0.0024 (6) | 0.0019 (7) | 0.0034 (6) |
| O3 | 0.0347 (10) | 0.0221 (8) | 0.0163 (8) | 0.0002 (7) | 0.0017 (6) | 0.0062 (6) |
| O1 | 0.0417 (11) | 0.0264 (9) | 0.0180 (8) | −0.0020 (7) | −0.0021 (7) | −0.0015 (6) |
| N1 | 0.0294 (10) | 0.0152 (8) | 0.0140 (9) | −0.0018 (7) | 0.0012 (7) | 0.0009 (7) |
| N2 | 0.0289 (10) | 0.0232 (10) | 0.0148 (9) | −0.0010 (8) | −0.0003 (8) | −0.0001 (7) |
| C12 | 0.0153 (10) | 0.0190 (10) | 0.0168 (10) | −0.0003 (8) | −0.0012 (8) | 0.0007 (8) |
| C5 | 0.0192 (11) | 0.0175 (10) | 0.0149 (10) | −0.0025 (8) | −0.0018 (8) | 0.0025 (8) |
| C13 | 0.0142 (10) | 0.0199 (10) | 0.0165 (10) | −0.0004 (8) | −0.0019 (8) | 0.0005 (8) |
| C10 | 0.0151 (10) | 0.0146 (10) | 0.0165 (10) | −0.0016 (7) | −0.0031 (8) | 0.0013 (8) |
| C11 | 0.0168 (10) | 0.0166 (10) | 0.0156 (10) | −0.0022 (8) | −0.0032 (8) | 0.0005 (8) |
| C9 | 0.0138 (10) | 0.0178 (10) | 0.0162 (10) | −0.0028 (8) | −0.0021 (8) | 0.0014 (8) |
| C6 | 0.0224 (11) | 0.0189 (10) | 0.0187 (10) | 0.0014 (8) | 0.0004 (8) | −0.0010 (8) |
| C7 | 0.0240 (11) | 0.0146 (10) | 0.0239 (11) | 0.0015 (9) | −0.0020 (9) | 0.0013 (8) |
| C15 | 0.0208 (11) | 0.0289 (12) | 0.0164 (10) | 0.0010 (9) | 0.0004 (8) | 0.0016 (9) |
| C8 | 0.0183 (10) | 0.0164 (10) | 0.0190 (10) | −0.0011 (8) | −0.0024 (8) | 0.0042 (8) |
| C14 | 0.0158 (10) | 0.0202 (10) | 0.0156 (10) | −0.0026 (8) | −0.0033 (8) | 0.0022 (8) |
| C18 | 0.0267 (11) | 0.0174 (10) | 0.0228 (11) | 0.0025 (9) | 0.0006 (9) | 0.0015 (8) |
| C2 | 0.0235 (11) | 0.0230 (11) | 0.0226 (11) | 0.0006 (9) | 0.0019 (9) | 0.0008 (9) |
| C17 | 0.0277 (12) | 0.0211 (11) | 0.0298 (12) | 0.0043 (9) | 0.0021 (10) | −0.0033 (9) |
| C1 | 0.0205 (11) | 0.0218 (11) | 0.0185 (10) | 0.0013 (8) | 0.0006 (8) | 0.0017 (8) |
| C16 | 0.0258 (12) | 0.0293 (12) | 0.0212 (11) | 0.0037 (9) | 0.0028 (9) | −0.0048 (9) |
| C3 | 0.0398 (14) | 0.0298 (13) | 0.0199 (11) | −0.0015 (11) | 0.0037 (10) | 0.0016 (9) |
| C4 | 0.0559 (18) | 0.0280 (13) | 0.0302 (13) | −0.0085 (12) | 0.0012 (12) | 0.0085 (10) |
| S1—C1 | 1.656 (2) | C9—C14 | 1.487 (3) |
| O2—C11 | 1.228 (3) | C6—H6 | 0.9300 |
| O3—C14 | 1.226 (3) | C6—C7 | 1.384 (3) |
| O1—C2 | 1.226 (3) | C7—H7 | 0.9300 |
| N1—H1 | 0.8600 | C7—C8 | 1.384 (3) |
| N1—C5 | 1.407 (3) | C15—H15 | 0.9300 |
| N1—C1 | 1.364 (3) | C15—C16 | 1.387 (3) |
| N2—H2 | 0.8600 | C8—H8 | 0.9300 |
| N2—C2 | 1.385 (3) | C18—H18 | 0.9300 |
| N2—C1 | 1.395 (3) | C18—C17 | 1.388 (3) |
| C12—C13 | 1.400 (3) | C2—C3 | 1.503 (3) |
| C12—C11 | 1.484 (3) | C17—H17 | 0.9300 |
| C12—C18 | 1.397 (3) | C17—C16 | 1.388 (3) |
| C5—C10 | 1.411 (3) | C16—H16 | 0.9300 |
| C5—C6 | 1.399 (3) | C3—H3A | 0.9700 |
| C13—C15 | 1.392 (3) | C3—H3B | 0.9700 |
| C13—C14 | 1.481 (3) | C3—C4 | 1.524 (4) |
| C10—C11 | 1.482 (3) | C4—H4A | 0.9600 |
| C10—C9 | 1.412 (3) | C4—H4B | 0.9600 |
| C9—C8 | 1.395 (3) | C4—H4C | 0.9600 |
| C5—N1—H1 | 117.0 | C9—C8—H8 | 120.3 |
| C1—N1—H1 | 117.0 | C7—C8—C9 | 119.49 (19) |
| C1—N1—C5 | 126.06 (19) | C7—C8—H8 | 120.3 |
| C2—N2—H2 | 115.1 | O3—C14—C13 | 121.5 (2) |
| C2—N2—C1 | 129.79 (19) | O3—C14—C9 | 120.32 (19) |
| C1—N2—H2 | 115.1 | C13—C14—C9 | 118.13 (18) |
| C13—C12—C11 | 121.73 (19) | C12—C18—H18 | 120.0 |
| C18—C12—C13 | 119.5 (2) | C17—C18—C12 | 120.1 (2) |
| C18—C12—C11 | 118.74 (19) | C17—C18—H18 | 120.0 |
| N1—C5—C10 | 121.02 (18) | O1—C2—N2 | 123.4 (2) |
| C6—C5—N1 | 119.38 (19) | O1—C2—C3 | 122.8 (2) |
| C6—C5—C10 | 119.54 (19) | N2—C2—C3 | 113.80 (19) |
| C12—C13—C14 | 120.11 (19) | C18—C17—H17 | 119.9 |
| C15—C13—C12 | 120.1 (2) | C18—C17—C16 | 120.1 (2) |
| C15—C13—C14 | 119.83 (19) | C16—C17—H17 | 119.9 |
| C5—C10—C11 | 121.97 (18) | N1—C1—S1 | 127.30 (17) |
| C5—C10—C9 | 118.90 (19) | N1—C1—N2 | 114.5 (2) |
| C9—C10—C11 | 119.10 (19) | N2—C1—S1 | 118.19 (16) |
| O2—C11—C12 | 119.42 (19) | C15—C16—C17 | 120.3 (2) |
| O2—C11—C10 | 121.78 (19) | C15—C16—H16 | 119.9 |
| C10—C11—C12 | 118.78 (18) | C17—C16—H16 | 119.9 |
| C10—C9—C14 | 121.97 (18) | C2—C3—H3A | 109.0 |
| C8—C9—C10 | 120.52 (19) | C2—C3—H3B | 109.0 |
| C8—C9—C14 | 117.50 (18) | C2—C3—C4 | 112.9 (2) |
| C5—C6—H6 | 119.9 | H3A—C3—H3B | 107.8 |
| C7—C6—C5 | 120.3 (2) | C4—C3—H3A | 109.0 |
| C7—C6—H6 | 119.9 | C4—C3—H3B | 109.0 |
| C6—C7—H7 | 119.5 | C3—C4—H4A | 109.5 |
| C6—C7—C8 | 121.0 (2) | C3—C4—H4B | 109.5 |
| C8—C7—H7 | 119.5 | C3—C4—H4C | 109.5 |
| C13—C15—H15 | 120.0 | H4A—C4—H4B | 109.5 |
| C16—C15—C13 | 119.9 (2) | H4A—C4—H4C | 109.5 |
| C16—C15—H15 | 120.0 | H4B—C4—H4C | 109.5 |
| H··· | ||||
| N1—H1···O1 | 0.86 | 1.98 | 2.685 (2) | 138 |
| N1—H1···O2 | 0.86 | 2.14 | 2.652 (2) | 117 |
| N2—H2···O3i | 0.86 | 2.19 | 3.038 (2) | 167 |
| C3—H3 | 0.97 | 2.52 | 3.414 (3) | 153 |
| C15—H15···S1iii | 0.93 | 2.87 | 3.553 (2) | 131 |
| C17—H17···O2iv | 0.93 | 2.47 | 3.280 (3) | 145 |