Literature DB >> 35490297

Charge and redox states modulate granulin-TDP-43 coacervation toward phase separation or aggregation.

Anukool A Bhopatkar1, Shailendra Dhakal1, Hannah G Abernathy2, Sarah E Morgan2, Vijayaraghavan Rangachari3.   

Abstract

Cytoplasmic inclusions containing aberrant proteolytic fragments of TDP-43 are associated with frontotemporal lobar degeneration (FTLD) and other related pathologies. In FTLD, TDP-43 is translocated into the cytoplasm and proteolytically cleaved to generate a prion-like domain (PrLD) containing C-terminal fragments (C25 and C35) that form toxic inclusions. Under stress, TDP-43 partitions into membraneless organelles called stress granules (SGs) by coacervating with RNA and other proteins. To study the factors that influence the dynamics between these cytoplasmic foci, we investigated the effects of cysteine-rich granulins (GRNs 1-7), which are the proteolytic products of progranulin, a protein implicated in FTLD, on TDP-43. We show that extracellular GRNs, typically generated during inflammation, internalize and colocalize with PrLD as puncta in the cytoplasm of neuroblastoma cells but show less likelihood of their presence in SGs. In addition, we show GRNs and PrLD coacervate to undergo liquid-liquid phase separation (LLPS) or form gel- or solid-like aggregates. Using charge patterning and conserved cysteines among the wild-type GRNs as guides, along with specifically engineered mutants, we discover that the negative charges on GRNs drive LLPS while the positive charges and the redox state of cysteines modulate these phase transitions. Furthermore, RNA and GRNs compete and expel one another from PrLD condensates, providing a basis for GRN's absence in SGs. Together, the results help uncover potential modulatory mechanisms by which extracellular GRNs, formed during chronic inflammatory conditions, could internalize and modulate cytoplasmic TDP-43 inclusions in proteinopathies.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35490297      PMCID: PMC9247478          DOI: 10.1016/j.bpj.2022.04.034

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  108 in total

1.  Epithelins 1 and 2: isolation and characterization of two cysteine-rich growth-modulating proteins.

Authors:  M Shoyab; V L McDonald; C Byles; G J Todaro; G D Plowman
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

2.  Preferred Hydrogen-Bonding Partners of Cysteine: Implications for Regulating Cys Functions.

Authors:  Karine Mazmanian; Karen Sargsyan; Cédric Grauffel; Todor Dudev; Carmay Lim
Journal:  J Phys Chem B       Date:  2016-09-27       Impact factor: 2.991

3.  Frontotemporal lobar degeneration: defining phenotypic diversity through personalized medicine.

Authors:  David J Irwin; Nigel J Cairns; Murray Grossman; Corey T McMillan; Edward B Lee; Vivianna M Van Deerlin; Virginia M-Y Lee; John Q Trojanowski
Journal:  Acta Neuropathol       Date:  2014-12-31       Impact factor: 17.088

Review 4.  The role of transactive response DNA-binding protein-43 in amyotrophic lateral sclerosis and frontotemporal dementia.

Authors:  Ian R A Mackenzie; Rosa Rademakers
Journal:  Curr Opin Neurol       Date:  2008-12       Impact factor: 5.710

Review 5.  Redox characteristics of the eukaryotic cytosol.

Authors:  H Reynaldo López-Mirabal; Jakob R Winther
Journal:  Biochim Biophys Acta       Date:  2007-11-07

6.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

7.  Unique inflammatory RNA profiles of microglia in Creutzfeldt-Jakob disease.

Authors:  Christopher A Baker; Laura Manuelidis
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

8.  Involvement of Progranulin and Granulin Expression in Inflammatory Responses after Cerebral Ischemia.

Authors:  Ichiro Horinokita; Hideki Hayashi; Rika Oteki; Risa Mizumura; Tatsuaki Yamaguchi; Akane Usui; Bo Yuan; Norio Takagi
Journal:  Int J Mol Sci       Date:  2019-10-21       Impact factor: 5.923

9.  Ligand effects on phase separation of multivalent macromolecules.

Authors:  Kiersten M Ruff; Furqan Dar; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-09       Impact factor: 11.205

10.  RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.

Authors:  Briana Van Treeck; David S W Protter; Tyler Matheny; Anthony Khong; Christopher D Link; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

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  1 in total

Review 1.  Protein conformation and biomolecular condensates.

Authors:  Diego S Vazquez; Pamela L Toledo; Alejo R Gianotti; Mario R Ermácora
Journal:  Curr Res Struct Biol       Date:  2022-09-14
  1 in total

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