Literature DB >> 35487209

It's a DoG-eat-DoG world-altered transcriptional mechanisms drive downstream-of-gene (DoG) transcript production.

Marc Morgan1, Ramin Shiekhattar2, Ali Shilatifard1, Shannon M Lauberth3.   

Abstract

The past decade has revolutionized our understanding of regulatory noncoding RNAs (ncRNAs). Among the most recently identified ncRNAs are downstream-of-gene (DoG)-containing transcripts that are produced by widespread transcriptional readthrough. The discovery of DoGs has set the stage for future studies to address many unanswered questions regarding the mechanisms that promote readthrough transcription, RNA processing, and the cellular functions of the unique transcripts. In this review, we summarize current findings regarding the biogenesis, function, and mechanisms regulating this exciting new class of RNA molecules.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; elongation; gene expression; next-generation sequencing analysis; noncoding RNAs; readthrough transcription; termination; transcriptional regulation; transcriptomics

Mesh:

Substances:

Year:  2022        PMID: 35487209      PMCID: PMC9208299          DOI: 10.1016/j.molcel.2022.04.008

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   19.328


  120 in total

Review 1.  Integrating mRNA processing with transcription.

Authors:  Nick J Proudfoot; Andre Furger; Michael J Dye
Journal:  Cell       Date:  2002-02-22       Impact factor: 41.582

Review 2.  The ends of the affair: capping and polyadenylation.

Authors:  A J Shatkin; J L Manley
Journal:  Nat Struct Biol       Date:  2000-10

Review 3.  Transcriptional interference--a crash course.

Authors:  Keith E Shearwin; Benjamin P Callen; J Barry Egan
Journal:  Trends Genet       Date:  2005-06       Impact factor: 11.639

Review 4.  On the importance of being co-transcriptional.

Authors:  Karla M Neugebauer
Journal:  J Cell Sci       Date:  2002-10-15       Impact factor: 5.285

5.  Comparative analysis reveals genomic features of stress-induced transcriptional readthrough.

Authors:  Anna Vilborg; Niv Sabath; Yuval Wiesel; Jenny Nathans; Flonia Levy-Adam; Therese A Yario; Joan A Steitz; Reut Shalgi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-19       Impact factor: 11.205

6.  PAF1 regulation of promoter-proximal pause release via enhancer activation.

Authors:  Fei Xavier Chen; Peng Xie; Clayton K Collings; Kaixiang Cao; Yuki Aoi; Stacy A Marshall; Emily J Rendleman; Michal Ugarenko; Patrick A Ozark; Anda Zhang; Ramin Shiekhattar; Edwin R Smith; Michael Q Zhang; Ali Shilatifard
Journal:  Science       Date:  2017-08-31       Impact factor: 47.728

7.  Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs.

Authors:  M E Nemeroff; S M Barabino; Y Li; W Keller; R M Krug
Journal:  Mol Cell       Date:  1998-06       Impact factor: 17.970

8.  Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

Authors:  Minna U Kaikkonen; Nathanael J Spann; Sven Heinz; Casey E Romanoski; Karmel A Allison; Joshua D Stender; Hyun B Chun; David F Tough; Rab K Prinjha; Christopher Benner; Christopher K Glass
Journal:  Mol Cell       Date:  2013-08-08       Impact factor: 17.970

Review 9.  The Integrator complex at the crossroad of coding and noncoding RNA.

Authors:  Nina Kirstein; Helena Gomes Dos Santos; Ezra Blumenthal; Ramin Shiekhattar
Journal:  Curr Opin Cell Biol       Date:  2020-12-16       Impact factor: 8.386

10.  lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation.

Authors:  Kaveh Daneshvar; M Behfar Ardehali; Isaac A Klein; Fu-Kai Hsieh; Arcadia J Kratkiewicz; Amin Mahpour; Sabrina O L Cancelliere; Chan Zhou; Brett M Cook; Wenyang Li; Joshua V Pondick; Sweta K Gupta; Sean P Moran; Richard A Young; Robert E Kingston; Alan C Mullen
Journal:  Nat Cell Biol       Date:  2020-09-07       Impact factor: 28.213

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