Literature DB >> 35486345

Using DeepLab v3 + -based semantic segmentation to evaluate platelet activation.

Tsung-Chen Kuo1, Ting-Wei Cheng1, Ching-Kai Lin1,2,3, Ming-Che Chang1, Kuang-Yao Cheng1, Yun-Chien Cheng4.   

Abstract

This research used DeepLab v3 + -based semantic segmentation to automatically evaluate the platelet activation process and count the number of platelets from scanning electron microscopy (SEM) images. Current activated platelet recognition and counting methods include (a) using optical microscopy or SEM images to identify and manually count platelets at different stages, or (b) using flow cytometry to automatically recognize and count platelets. However, the former is time- and labor-consuming, while the latter cannot be employed due to the complicated morphology of platelet transformation during activation. Additionally, because of how complicated the transformation of platelets is, current blood-cell image analysis methods, such as logistic regression or convolution neural networks, cannot precisely recognize transformed platelets. Therefore, this study used DeepLab v3 + , a powerful learning model for semantic segmentation of image analysis, to automatically recognize and count platelets at different activation stages from SEM images. Deformable convolution, a pretrained model, and deep supervision were added to obtain additional platelet transformation features and higher accuracy. The number of activated platelets was predicted by dividing the segmentation predicted platelet area by the average platelet area. The results showed that the model counted the activated platelets at different stages from the SEM images, achieving an error rate within 20%. The error rate was approximately 10% for stages 2 and 4. The proposed approach can thus save labor and time for evaluating platelet activation and facilitate related research.
© 2022. International Federation for Medical and Biological Engineering.

Entities:  

Keywords:  Activation process; Automatic counting; Deep learning; Platelet; Semantic segmentation

Mesh:

Year:  2022        PMID: 35486345     DOI: 10.1007/s11517-022-02575-3

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  3 in total

1.  Label-free detection of aggregated platelets in blood by machine-learning-aided optofluidic time-stretch microscopy.

Authors:  Yiyue Jiang; Cheng Lei; Atsushi Yasumoto; Hirofumi Kobayashi; Yuri Aisaka; Takuro Ito; Baoshan Guo; Nao Nitta; Natsumaro Kutsuna; Yasuyuki Ozeki; Atsuhiro Nakagawa; Yutaka Yatomi; Keisuke Goda
Journal:  Lab Chip       Date:  2017-07-11       Impact factor: 6.799

2.  A deep convolutional neural network for classification of red blood cells in sickle cell anemia.

Authors:  Mengjia Xu; Dimitrios P Papageorgiou; Sabia Z Abidi; Ming Dao; Hong Zhao; George Em Karniadakis
Journal:  PLoS Comput Biol       Date:  2017-10-19       Impact factor: 4.475

3.  Classification of red blood cell shapes in flow using outlier tolerant machine learning.

Authors:  Alexander Kihm; Lars Kaestner; Christian Wagner; Stephan Quint
Journal:  PLoS Comput Biol       Date:  2018-06-15       Impact factor: 4.475

  3 in total

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