Literature DB >> 35480121

Editorial: Gastrointestinal Tumor Heterogeneity and Related Anti-Cancer Strategies.

Rui Liao1, Yu-Jun Shi2, Michael D Chuong3,4, Ju Cao5.   

Abstract

Entities:  

Keywords:  gastrointestinal tumor; inter-patient heterogeneity; intra-tumor heterogeneity; phenotypic plasticity; targeted therapy; tumor microenvironment

Year:  2022        PMID: 35480121      PMCID: PMC9035924          DOI: 10.3389/fonc.2022.873240

Source DB:  PubMed          Journal:  Front Oncol        ISSN: 2234-943X            Impact factor:   5.738


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The significance of tumor microenvironment (TME) heterogeneity is increasingly becoming recognized as playing an essential role in tumorigenesis and malignant biological behaviors. Dr. Hanahan D (1) presents several prospective new cancer hallmarks and its enabling characteristics closely associated with tumor heterogeneity: 1) unlocking phenotypic plasticity, 2) non-mutational epigenetic reprogramming, 3) polymorphic microbiomes, and 4) senescent cells. The new facets of the conceptualization of cancer have a heuristic value in paving the way for the development of precision therapies and new targeted therapies. A growing knowledge base has revealed that the heterogeneity of gastrointestinal tumors, including inter-patient heterogeneity (IPH) and intra-tumor heterogeneity (ITH) of gastric cancer, colorectal cancer, hepatocellular carcinoma (HCC), cholangiocarcinoma, pancreatic cancer, gallbladder carcinoma, and esophageal adenocarcinoma, is a determining factor of tumor development (2, 3). Therefore, based on molecular heterogeneity in TME, more novel and effective anti-cancer therapeutic algorithms have been discussed to selected subsets of gastrointestinal tumors. Of note, inter-patient molecular heterogeneity has hampered the clinical practice of an expanding variety of targeted therapies and personalizing their prescriptions. An inter-patient molecular heterogeneity investigation using genomic and transcriptomic data for 4890 tumors from The Cancer Genome Atlas database showed that the repertoires of molecular targets of the clinical recommendations for accepted drugs were not congruent with the gene mutation patterns of different cancer types (4). Due to IPH, gastrointestinal tumors between individual patients frequently exhibit distinct clinical behaviors and treatment response produced by high levels of transcriptomic and (epi)genomic variation. A comprehensive single-cell profile of gastric cancer across clinical stages and histological subtypes identified 34 distinct cell-lineage states, and highlighted inter- and intra-lineage similarities and differences between patient-derived organoids and primary tumors (5). Enhancer variation has been identified as a major cause of IPH in cancer. Histone modification and functional assay data may be one of the options contributing genetic (e.g. ING1, ARL4C) and regulatory trans-acting factor (e.g. HNF4α) mechanisms to gastric cancer enhancer functional heterogeneity (6). Also, ITH poses an important clinical challenge in therapeutic resistance. To better address the origin and drivers of ITH across cancer types, a robust consensus strategy has been developed to assess ITH and its origin, drivers, and recurrent changes in mutation signature activity via copy number and cluster mutations (7). This study underlined the importance of ITH and also provided detailed insight into tumor evolutionary dynamics. In HCC, the heterogeneous genomic landscape may facilitate effective anti-cancer therapeutic algorithms of personalized management. For instance, the molecular profile of the original tumor revealed that patients with intra-hepatic metastases should receive targeted therapy, whereas patients with multicentric tumors patients sharing the same genetic and environmental backgrounds could benefit from treating the underlying liver disease (8). An atlas of inter- and intra-tumor heterogeneity of apoptosis competency in colorectal cancer suggested that ITH may represent an intrinsic, non-genomic property instead of increase with the process of malignant transformation (9). Therefore, further in-depth analyses of IPH and ITH in larger patient cohorts with gastrointestinal tumors are required. This Research Topic collection embodies 16 multidisciplinary articles focused on “gastrointestinal tumor heterogeneity and related anti-cancer strategies”. Overall, the 16 papers in this Research Topic discussed gastrointestinal IPH and ITH deepening mechanistic insights, involved with basic experimental research, and clinical outcome predictive model and bioinformatics analysis for early diagnosis and targeted therapies of tumors. Specifically in this Research Topic, Kim et al. reported that dynamic changes in serum KRASG12/13 mutation heterogeneous status in serum cell-free DNA represented a potential source for monitoring recurrence of colorectal adenocarcinoma. Moreover, Gao et al. found the HCC patients from distinct immune subclasses with various heterogeneous statuses had different clinical prognoses and responses to personalized treatment through tumor transcriptome data analysis. In a review article, Li et al. summarized current advances concerning the reciprocal crosstalk of malignant cells and mesenchymal stem cells in the progression of gastric cancer, stressed the complexity and heterogeneity of tumor-stroma connections, and discussed their underlying therapeutic implications. We sincerely thank all the authors, various reviewers/editors of the respective manuscripts, and the editorial team at Frontiers for their assistance and support in the process of reviewing and publishing this Research Topic, “Gastrointestinal Tumor Heterogeneity and Related Anti-Cancer Strategies”. The next decade promises to illuminate more in-depth aspects of tumor heterogeneity contributing to gastrointestinal cancer prevention and treatments.

Author Contributions

RL wrote this manuscript. YJ, MC, and JC reviewed it. All authors listed have made a direct and intellectual contribution to the work, and approved the submitted version.

Funding

This research was supported by the National Natural Science Foundation of China (No. 82072689), Science and Health Joint Research Project of Chongqing Municipality (2020GDRC013).

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
  9 in total

Review 1.  Hallmarks of Cancer: New Dimensions.

Authors:  Douglas Hanahan
Journal:  Cancer Discov       Date:  2022-01       Impact factor: 39.397

2.  Single-Cell Atlas of Lineage States, Tumor Microenvironment, and Subtype-Specific Expression Programs in Gastric Cancer.

Authors:  Vikrant Kumar; Kalpana Ramnarayanan; Raghav Sundar; Nisha Padmanabhan; Supriya Srivastava; Mayu Koiwa; Tadahito Yasuda; Vivien Koh; Kie Kyon Huang; Su Ting Tay; Shamaine Wei Ting Ho; Angie Lay Keng Tan; Takatsugu Ishimoto; Guowei Kim; Asim Shabbir; Qingfeng Chen; Biyan Zhang; Shengli Xu; Kong-Peng Lam; Huey Yew Jeffrey Lum; Ming Teh; Wei Peng Yong; Jimmy Bok Yan So; Patrick Tan
Journal:  Cancer Discov       Date:  2022-03-01       Impact factor: 39.397

3.  Heterogeneous immunogenomic features and distinct escape mechanisms in multifocal hepatocellular carcinoma.

Authors:  Liang-Qing Dong; Li-Hua Peng; Li-Jie Ma; Dong-Bing Liu; Shu Zhang; Shu-Zhen Luo; Jun-Hua Rao; Hong-Wen Zhu; Shuai-Xi Yang; Shui-Jun Xi; Min Chen; Fan-Fan Xie; Fu-Qiang Li; Wen-Hui Li; Chen Ye; Li-Ya Lin; Yu-Jue Wang; Xiao-Ying Wang; Da-Ming Gao; Hu Zhou; Huan-Ming Yang; Jian Wang; Shi-da Zhu; Xiang-Dong Wang; Ya Cao; Jian Zhou; Jia Fan; Kui Wu; Qiang Gao
Journal:  J Hepatol       Date:  2019-12-27       Impact factor: 25.083

4.  Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes.

Authors:  Stefan C Dentro; Ignaty Leshchiner; Kerstin Haase; Maxime Tarabichi; Jeff Wintersinger; Amit G Deshwar; Kaixian Yu; Yulia Rubanova; Geoff Macintyre; Jonas Demeulemeester; Ignacio Vázquez-García; Kortine Kleinheinz; Dimitri G Livitz; Salem Malikic; Nilgun Donmez; Subhajit Sengupta; Pavana Anur; Clemency Jolly; Marek Cmero; Daniel Rosebrock; Steven E Schumacher; Yu Fan; Matthew Fittall; Ruben M Drews; Xiaotong Yao; Thomas B K Watkins; Juhee Lee; Matthias Schlesner; Hongtu Zhu; David J Adams; Nicholas McGranahan; Charles Swanton; Gad Getz; Paul C Boutros; Marcin Imielinski; Rameen Beroukhim; S Cenk Sahinalp; Yuan Ji; Martin Peifer; Inigo Martincorena; Florian Markowetz; Ville Mustonen; Ke Yuan; Moritz Gerstung; Paul T Spellman; Wenyi Wang; Quaid D Morris; David C Wedge; Peter Van Loo
Journal:  Cell       Date:  2021-04-07       Impact factor: 41.582

5.  Integrative epigenomic and high-throughput functional enhancer profiling reveals determinants of enhancer heterogeneity in gastric cancer.

Authors:  Taotao Sheng; Shamaine Wei Ting Ho; Wen Fong Ooi; Chang Xu; Manjie Xing; Nisha Padmanabhan; Kie Kyon Huang; Lijia Ma; Mohana Ray; Yu Amanda Guo; Ngak Leng Sim; Chukwuemeka George Anene-Nzelu; Mei Mei Chang; Milad Razavi-Mohseni; Michael A Beer; Roger Sik Yin Foo; Raghav Sundar; Yiong Huak Chan; Angie Lay Keng Tan; Xuewen Ong; Anders Jacobsen Skanderup; Kevin P White; Sudhakar Jha; Patrick Tan
Journal:  Genome Med       Date:  2021-10-11       Impact factor: 11.117

6.  An atlas of inter- and intra-tumor heterogeneity of apoptosis competency in colorectal cancer tissue at single-cell resolution.

Authors:  Andreas Ulrich Lindner; Manuela Salvucci; Elizabeth McDonough; Sanghee Cho; Xanthi Stachtea; Emer P O'Connell; Alex D Corwin; Alberto Santamaria-Pang; Steven Carberry; Michael Fichtner; Sandra Van Schaeybroeck; Pierre Laurent-Puig; John P Burke; Deborah A McNamara; Mark Lawler; Anup Sood; John F Graf; Markus Rehm; Philip D Dunne; Daniel B Longley; Fiona Ginty; Jochen H M Prehn
Journal:  Cell Death Differ       Date:  2021-11-09       Impact factor: 12.067

7.  Integrative Characterization of Immune-relevant Genes in Hepatocellular Carcinoma.

Authors:  Wei-Feng Hong; Yu-Jun Gu; Na Wang; Jie Xia; Heng-Yu Zhou; Ke Zhan; Ming-Xiang Cheng; Ying Cai
Journal:  J Clin Transl Hepatol       Date:  2021-03-08

8.  Disparity between Inter-Patient Molecular Heterogeneity and Repertoires of Target Drugs Used for Different Types of Cancer in Clinical Oncology.

Authors:  Marianna A Zolotovskaia; Maxim I Sorokin; Ivan V Petrov; Elena V Poddubskaya; Alexey A Moiseev; Marina I Sekacheva; Nicolas M Borisov; Victor S Tkachev; Andrew V Garazha; Andrey D Kaprin; Peter V Shegay; Alf Giese; Ella Kim; Sergey A Roumiantsev; Anton A Buzdin
Journal:  Int J Mol Sci       Date:  2020-02-26       Impact factor: 5.923

  9 in total

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