Outcomes of SARS-CoV-2 infection in patients with celiac disease: a multicenter research network study.

Background: Celiac disease (CD) is associated with an increased risk for respiratory infections and severe outcomes. No data have been reported in the scientific literature regarding the outcomes of COVID-19 in this population. The aim of this study was to report matched clinical outcomes in a large cohort of 930 patients with COVID-19 in the setting of known CD.
Methods: Analysis of a multicenter research network TriNETX was performed, including COVID-19 patients aged more than 16 years. Outcomes of COVID-19-positive patients with concurrent CD were compared with a propensity-matched cohort of patients without CD.
Results: A total of 341,499 patients with SARS-CoV-2 infection were identified on the research network: 930 (0.27%) with CD and 340,569 (99.73%) without CD. In the 30- and 60-day periods post SARS-CoV-2 infection, 12 (1.29%) and 13 (1.40%) deaths, respectively, were reported in the CD group. Fewer patients in the CD group reached the composite outcome of either mechanical ventilation or mortality at 60 days (risk ratio 0.58, 95% confidence interval 0.36-0.95). After propensity matching, no difference in clinical outcomes was observed.
Conclusion: Our data suggest that patients with CD are not at increased risk of COVID-19-related morbidity or mortality. Copyright: © Hellenic Society of Gastroenterology.

Introduction

Celiac disease (CD) is a chronic immune-mediated gluten-dependent enteropathy, with a global prevalence of 1.4% based on serologic testing and 0.7% based on biopsy results [1]. It is associated with an increased risk for sepsis, respiratory infections and severe outcomes with conditions such as pneumococcal disease [2], varicella zoster [3], and influenza [4,5]. There is some evidence to suggest that this increased risk persists even among asymptomatic patients after adoption of a gluten-free diet [4,6]. Interestingly, this increased susceptibility results from the pathophysiology of CD, rather than from immunosuppressive therapy, as seen in other immune-mediated conditions, such as inflammatory bowel disease [7]. In theory, this intrinsically high susceptibility, compounded with malnutrition and immunosuppressive medical management, may put CD patients at risk of life-threatening disease in the SARS-CoV-2 pandemic [8].

As the SARS-CoV-2 pandemic evolves, it is paramount that outcomes in commonly susceptible patient subpopulations be studied to allow risk stratification and guide therapy. However, there is a paucity of scientific evidence regarding the outcomes of COVID-19 in patients with CD. To address this gap, we analyzed the clinical outcomes among a large cohort of 930 patients with COVID-19 in the setting of known CD. Outcomes were compared with a propensity-matched cohort of COVID-19 patients without CD.

Patients and methods

Data source

A retrospective cohort study was conducted utilizing the multi-institutional research network TriNETX (Cambridge, MA, USA) platform. TriNETX is a federated research network that includes more than 40 healthcare organizations in the USA, providing real-time access to the healthcare records. It includes >40 million patients from the healthcare organizations, in a de-identified fashion. The data are directly retrieved from the electronic health record management systems (EHRs) of participating organizations. These organizations are large academic centers that operate both tertiary care and satellite outpatient office locations.

Clinical variables (facts) are derived directly through a built-in natural language processing system that extracts variables from clinical documents. Robust quality assurance is achieved at the time of extraction from EHRs before inclusion in this database. This interface only provides aggregate counts and statistical summaries to protect personal health information and ensures data remain de-identified at all levels of retrieval and dissemination.

TriNetX has received a waiver from Western IRB as it only provides de-identified information. At our institution West Virginia University Clinical and Translational Science Institute (WVU CTSI) manages the TriNetX platform and provides access to the end-users.

Patient selection

Centers for Disease Control and Prevention COVID-19 coding guidance was used to identify COVID-19 cases. The International Classification of Diseases, Ninth Revision and Tenth Revision, Clinical Modification (ICD-10-CM) codes and Logical Observation Identifiers Names and Codes codes for positive laboratory tests were used. This search strategy has been used previously in published data from the TriNetX. The codes are illustrated in Supplementary Table 1. A real time search and analysis was conducted on the TriNetX platform and updated through February 1, 2021, to identify patients aged more than 16 years with SARS-CoV-2 infection. Patients were then classified into a CD cohort and a non-CD cohort, based on a previous diagnosis of CD. This study method has been validated previously [9,10].

Study duration

Enrolment between January 20, 2020, and February 01, 2021 was required for inclusion in the study cohort. January 20, 2020, was chosen as it was the date of diagnosis of the first case of SARS-CoV-2 infection in the USA. February 01, 2021, was chosen to ensure 60 days of follow up for all included patients, since the primary study endpoint was a composite outcome at 60 days from diagnosis.

Study outcomes

The primary study outcome was a composite event of death or requirement for mechanical ventilation during 30- and 60-day periods from the index event. Other outcomes included death, hospitalization, and need for critical care during the 30- and 60-day follow-up periods.

Study definitions for data aggregation

Index event: Diagnosis of COVID 19 by criteria defined above.

Time windows: Study outcomes were assessed at 30 and 60 days from the index event and included the day of the index event. Baseline characteristics for patients were considered until the day of COVID-19 diagnosis or first positive COVID-19 test result.

Statistical analysis

The TriNetX platform was used to conduct all analyses. The chi-square test and t-test were used for univariate analyses. Propensity score matching was performed 1:1 with age, race, diabetes, hypertension, chronic lung diseases, nicotine dependence, heart failure, ischemic heart disease, body mass index, and sex as covariates, and a propensity score-matched control group of patients without CD was identified. The 1:1 matching was performed based on the propensity scores generated by using greedy nearest neighbor algorithms with a caliper width of 0.1 pooled standard deviations; further details are illustrated in Supplementary Table 1. The balance on covariates was assessed using the standardized mean difference, and absolute values >0.1 were considered positive for residual imbalance. A 2-sided alpha of less than 0.05 was defined a priori for statistical significance. Risk ratios (RR) with 95% confidence intervals (CI) were calculated for all analyses. The TriNetX platform utilizes input matrices of user identified covariates and conducts logistic regression analysis to obtain propensity scores for individual subjects. TriNetX randomizes the order of rows in order to eliminate bias resulting from nearest neighbor algorithms.

Results

Study population

We identified a total of 341,499 patients with SARS-CoV-2 infection on the research network: 930 (0.27%) with CD and 340,569 (99.73%) without CD. Baseline characteristics and associated comorbid conditions are presented in Table 1. Comorbidities, including hypertension, diabetes mellitus and lower respiratory diseases, were more common in patients with CD, as was Caucasian race and female sex (all P<0.05).

Table 1

Comparison of baseline clinical characteristics in COVID-19 patients with and without celiac disease (CD) before and after propensity score matching

Clinical outcomes

Eighty-one patients with CD required hospitalization (8.71%). In the 30- and 60-day periods post-SARS-CoV-2 infection, 12 (1.29%) and 13 (1.40%) deaths, respectively, were reported in the CD group. The composite outcome was reached by 16 (1.72%) in the CD group, at both 30-and 60-day time points (Table 2). In the crude unmatched analysis, no difference was observed between the CD and non-CD cohorts in rates of hospitalization, need for critical care, acute kidney injury or mortality at 30-and 60-day follow up; however, fewer patients in the CD group reached the composite outcome at 60 days (RR 0.58, 95%CI 0.36-0.95).

Table 2

Clinical outcomes in COVID-19 patients with and without celiac disease (CD) before and after propensity score matching

After propensity matching, there was no difference between the 2 cohorts in the rates of composite endpoint at 30 days (RR 0.73, 95%CI 0.38-1.38) and 60 days (RR 0.70, 95%CI 0.37-1.31), 30-day (RR 0.80, 95%CI 0.38-1.70), and 60-day (RR 0.87, 95%CI 0.42-1.81) mortality, need for hospitalization (RR 1.00, 95%CI 0.75-1.34), critical care requirements (RR 0.89, 95%CI 0.52-1.53), or acute renal failure (RR 1.39, 95%CI 0.84-2.27), as shown in Table 2.

Discussion

Our study shows that patients with CD do not have a significantly increased risk for worse outcomes, including mortality, need for hospitalization, critical care services and acute kidney injury. In fact, in the crude analysis, patients with CD were at lower risk of reaching the composite poor outcome at 60-day follow up (RR 0.58, 95%CI 0.36-0.95). This association did not hold true after propensity matching, which may indicate that the lower risk among CD patients was driven by a higher proportion of females (75.27%) and Caucasians (86.88%) in the CD group, known to have better outcomes with COVID-19 [8,11]. It is noteworthy that only 10% of patients required hospitalization in the CD cohort. This is striking, given the well-documented evidence for worse outcomes with respiratory infections in CD patients [3,4,12].

As the COVID-19 pandemic continues to evolve, there is a dire need to identify risk factors for poor outcomes with COVID-19 to optimize risk stratification for prevention, vaccine administration, surveillance and therapeutic measures, especially in high-risk populations. Evidence on outcomes of COVID-19 infection shows that patients with a weak immune system, such as the elderly population or those with multiple comorbid conditions, tend to have a higher case fatality rate [13]. Further, data show that transplant populations, especially patients on long-term immunosuppressive therapy, tend to have particularly worse outcomes with COVID-19 [9,14]. Thus, it could be argued theoretically that CD, with its baseline alterations in afflicted individuals’ immune profile, immunosuppressive therapy, and other well-documented data on higher predisposition and poor outcomes with respiratory infections (e.g., pneumococcal pneumonia, tuberculosis, and influenza), should alter the disease course of COVID-19 in the CD population for the worse [2-5]. Interestingly, another postulation is that since the immune-mediated cytokine response is primarily responsible for the damage resulting from COVID-19, CD patients, with their weaker immune systems, may fare better with COVID-19 infection [15].

Lionetti et al [15] and Zhen et al [16] found no increased risk for contracting COVID-19 in patients with CD. Likewise, Zingone et al conducted a cross-sectional study at the height of the pandemic in Italy and found that, among a cohort of 138 CD patients, none had been diagnosed with COVID-19 [17]. Data from Sweden also corroborate our findings: Lebwohl et al showed that CD patients with COVID-19 were not at a significantly higher risk of hospitalization, severe COVID-19 or all-cause mortality [18]. Importantly, results from the Surveillance Epidemiology Under Research Exclusion for Celiac Disease (SECURE-CELIAC) [19], an international, de-identified database comprising 123 COVID-19 cases among patients with CD from 21 countries, also noted comparable hospitalization (12%) and case fatality rates (2.5%) to the general population: 20% hospitalization rate [20,21] and 1-11% case fatality rate [22,23].

Our study is one of the first to investigate the outcome of COVID-19 in patients with CD. Propensity matching and a large cohort support the reliability of our results. Importantly, the multicenter nature of our study also increased the heterogeneity in the included CD patient population, extending the generalizability of our conclusions. The major limitations of our study include biases inherent to studies based on electronic healthcare records, including misclassification bias. Residual confounding from imprecisely measured and unmatched variables, for instance physical activity, cannot be excluded.

In conclusion, our results show that patients with CD are not at higher risk of short-term COVID-19 related morbidity or mortality. The clinical course of COVID-19 in CD patients is not sufficiently worse to warrant a higher level of inpatient or critical care services compared to COVID-19 patients without CD. However, further longitudinal studies investigating long-term disease outcomes, particularly respiratory complications, in CD patients are required to bridge gaps in data and ensure optimal long-term surveillance and intervention.

What is already known:

Immunocompromised populations, such as transplant patients, often have worse outcomes with COVID-19

Celiac disease is associated with an increased risk of infection and poor outcomes with respiratory infections

There are only limited data on outcomes of COVID-19 in patients with celiac disease

What the new findings are:

The hospitalization rate for COVID-19 infection in patients with celiac disease was 8.71%

The 30- and 60-day post-COVID-19 infection mortality rates in a celiac disease population were 1.29% and 1.40%, respectively

There was no difference in 30- or 60-day mortality, need for hospitalization, critical care requirements, or acute renal failure in patients with celiac disease compared to the general population

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