| Literature DB >> 35478568 |
Tung Truong Thanh1,2, Huy Luong Xuan1,2, Thang Nguyen Quoc3.
Abstract
Quorum sensing is a well-known term for describing bacterial cell-cell communication. Bacteria use quorum sensing pathways to respond to external factors such as nutrient availability, defense mechanisms, and coordinate host toxic behaviors such as biofilm formation, virulence production, and other pathogenesis. Discovery of novel compounds which inhibit quorum sensing without being antibiotic are currently emerging fields. Herein, the library of fifteen benzo[d]thiazole/quinoline-2-thiol bearing 2-oxo-2-substituted-phenylethan-1-yl compounds was designed, synthesized and evaluated to find novel quorum sensing inhibitors. Firstly, compounds were evaluated for their growth inhibitory activities at high concentrations up to 1000 μg mL-1 toward Pseudomonas aeruginosa. Under our conditions, twelve compounds showed moderate growth inhibitory activities in the concentration tested. To our delight, three compounds 3, 6 and 7 do not affect the growth of the bacteria which were chosen for the evaluation of quorum sensing inhibitor activities. In the LasB system, our compounds 3, 6, 7 showed promising quorum-sensing inhibitors with IC50 of 115.2 μg mL-1, 182.2 μg mL-1 and 45.5 μg mL-1, respectively. In the PqsR system, no activity observed suggesting that the selectivity of the compound toward the LasB system. In addition, 7 showed the moderate anti-biofilm formation of Pseudomonas aeruginosa. Docking studies revealed that 3, 6 and 7 binding to the active site of Pseudomonas aeruginosa quorum sensing LasR system with better affinity compared to reference compounds 4-NPO. Finally, computation calculations suggest that compounds are a good template for further drug development. This journal is © The Royal Society of Chemistry.Entities:
Year: 2021 PMID: 35478568 PMCID: PMC9038142 DOI: 10.1039/d1ra03616e
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Fig. 1Signal molecules N-(3-oxododecanoyl)-l-homoserine lactone (a) and N-butanoyl-l-homoserine lactone (b).
Fig. 2(A) The studies conducted in this work. (B) Design of library compounds.
Scheme 1Synthetic scheme for the preparation of the library compounds.
Growth inhibitory activities of the synthesized compoundsa
|
| ||||
|---|---|---|---|---|
| Cpds | R1 | R2 | MW | MIC range (μg mL−1) |
| 1 |
| Phenyl | 285 | <128 |
| 2 |
| 4-Methoxyphenyl | 315 | <256 |
| 3 |
| 2,3-Dihydrobenzo[ | 343 | >512 |
| 4 |
| 2-Methoxyphenyl | 315 | <256 |
| 5 |
| 3,4-Dichlorophenyl | 354 | <128 |
| 6 |
| 3-Methoxyphenyl | 315 | >512 |
| 7 |
| 2,4-Dimethoxyphenyl | 345 | >512 |
| 8 |
| 2-Methoxyphenyl | 309 | <128 |
| 9 |
| 2,3-Dihydrobenzo[ | 337 | <128 |
| 10 |
| 3-Methoxyphenyl | 309 | <256 |
| 11 |
| 4-Hydroxy-3-methoxyphenyl | 325 | <128 |
| 12 |
| Phenyl | 279 | <128 |
| 13 |
| 4-Methoxyphenyl | 309 | <256 |
| 14 |
| 4-Hydrooxyphenyl | 295 | <64 |
| 15 |
| 2,4-Dimethoxyphenyl | 339 | <128 |
| Ref | Imipenem | 0.15 | ||
Experiments were performed in triplicate.
Positive control.
Fig. 3QS inhibitory activities of compounds 3, 6, 7 screened with the lasB-gfp (P. aeruginosa) monitor strain. GFP fluorescence (RFU), GFP expression is controlled by the QS controlled lasB promoter. Compounds were tested in triplicate and in 2-fold dilutions from 100 μg mL−1. No QSI: control with no addition of test compound. No OHHL: N-(3-oxohexanoyl)-l-homoserine lactone added. No bac: no bacteria.
IC50 of compounds toward lasB-gfp (P. aeruginosa) monitor strain
| Compounds | IC50 (QSI), μg mL−1 |
|---|---|
| 3 | 115.2 ± 1.32 |
| 6 | 182.2 ± 2.20 |
| 7 | 45.5 ± 1.05 |
| 4-NPO | 15.4 ± 2.44 |
QSI-reference 4-nitropyridine-N-oxide.[23]
Fig. 4Quantification of the biofilm formation results of 4-NPO, 3, 6, and 7 toward P. aeruginosa after 48 h growth with the concentration ranges from 50 μg mL−1 to 250 μg mL−1. DMSO is negative control. The error bars show the SD of anti-biofilm formation from three independent assays.
Fig. 5(A) Quantification of the biofilm formation results of 7 toward P. aeruginosa after 48 h growth with the concentration ranges from 200 μg mL−1 to 400 μg mL−1. DMSO is negative control. The error bars show the SD of anti-biofilm formation from three independent assays. (B) Bacterial growth (OD450, P. aeruginosa) treatment with difference concentrations of 7.
Fig. 6The cytotoxicity of compounds 3, 6, 7.
Fig. 7(A) Docking results of docking studies were performed for 3, 6, 7 and 4-NPO; (LasR ligand, PDB ID: 2UV0)). (B) Interaction of docked compounds with binding pocket.
Prediction of binding and fullfitness energy
| Compound | Binding energy | Fullfitness |
|---|---|---|
| 3 | −9.60 | −3003.51 |
| −8.70 | −2995.28 | |
| −7.76 | −2983.76 | |
| 6 | −8.96 | −3013.88 |
| −8.82 | −3014.97 | |
| −8.41 | −3006.36 | |
| 7 | −8.82 | −2998.77 |
| −8.02 | −2988.95 | |
| −7.90 | −2983.57 | |
| 4-NPO | −6.00 | −3001.90 |
| −5.92 | −3001.37 | |
| −5.88 | −3001.38 |
Three best energy.
ADME prediction of the hit compounds 3, 6, 7 and 4-NPO
| Cpd | Formula | MW | #Rot | #H-a | #H-d | MR | TPSA | Solubility | Sol. class | GI abs. | Bio. |
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | C17H13NO3S2 | 343.42 | 4 | 4 | 0 | 91.93 | 101.96 | 4.05 × 10−3 | Moderately soluble | High | 0.55 | No |
| 6 | C16H13NO2S2 | 315.41 | 5 | 3 | 0 | 87.55 | 92.73 | 4.48 × 10−3 | Moderately soluble | High | 0.55 | No |
| 7 | C17H15NO3S2 | 345.44 | 6 | 4 | 0 | 94.04 | 101.96 | 3.84 × 10−3 | Moderately soluble | High | 0.55 | No |
| 4-NPO | C5H4N2O3 | 140.10 | 1 | 3 | 0 | 36.43 | 71.28 | 2.55 × 101 | Very soluble | High | 0.55 | No |
Number of rotation bond.
Number of H-bond acceptors.
Number of H-bond donors.
Molecular refractivity.
Topological polar surface area.
Intrinsic solubility at 25 °C calculated by ESOL equation of Delaney.
Solubility class, ESOL class.
Gastrointestinal absorption: according to the white of the BOILED-Egg, SwissADME.
Abbott bioavailability score: probability of F > 10% in rat calculated by SwissADME.
P-Glycoprotein substrate: SVM model built on 1033 molecules (training set) and tested on 415 molecules (test set) 10-fold CV: ACC = 0.72/AUC = 0.77 external: ACC = 0.88/AUC = 0.94.
Fig. 8Computationally predicted pH-dependent log S and log D curve by chemAxon.