Literature DB >> 35478237

Machine learning-aided engineering of hydrolases for PET depolymerization.

Hongyuan Lu1, Daniel J Diaz2, Natalie J Czarnecki1, Congzhi Zhu1, Wantae Kim1, Raghav Shroff3,4, Daniel J Acosta3, Bradley R Alexander3, Hannah O Cole1,3, Yan Zhang3, Nathaniel A Lynd1, Andrew D Ellington3, Hal S Alper5.   

Abstract

Plastic waste poses an ecological challenge1-3 and enzymatic degradation offers one, potentially green and scalable, route for polyesters waste recycling4. Poly(ethylene terephthalate) (PET) accounts for 12% of global solid waste5, and a circular carbon economy for PET is theoretically attainable through rapid enzymatic depolymerization followed by repolymerization or conversion/valorization into other products6-10. Application of PET hydrolases, however, has been hampered by their lack of robustness to pH and temperature ranges, slow reaction rates and inability to directly use untreated postconsumer plastics11. Here, we use a structure-based, machine learning algorithm to engineer a robust and active PET hydrolase. Our mutant and scaffold combination (FAST-PETase: functional, active, stable and tolerant PETase) contains five mutations compared to wild-type PETase (N233K/R224Q/S121E from prediction and D186H/R280A from scaffold) and shows superior PET-hydrolytic activity relative to both wild-type and engineered alternatives12 between 30 and 50 °C and a range of pH levels. We demonstrate that untreated, postconsumer-PET from 51 different thermoformed products can all be almost completely degraded by FAST-PETase in 1 week. FAST-PETase can also depolymerize untreated, amorphous portions of a commercial water bottle and an entire thermally pretreated water bottle at 50 ºC. Finally, we demonstrate a closed-loop PET recycling process by using FAST-PETase and resynthesizing PET from the recovered monomers. Collectively, our results demonstrate a viable route for enzymatic plastic recycling at the industrial scale.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 35478237     DOI: 10.1038/s41586-022-04599-z

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  13 in total

1.  Insights into the Binding Interaction of Catechol 1,2-Dioxygenase with Catechol in Achromobacter xylosoxidans DN002.

Authors:  Yani Liu; Fengdan Wei; Rui Xu; Tao Cheng; Yanling Ma
Journal:  Appl Biochem Biotechnol       Date:  2022-09-08       Impact factor: 3.094

Review 2.  Deep Learning Concepts and Applications for Synthetic Biology.

Authors:  William A V Beardall; Guy-Bart Stan; Mary J Dunlop
Journal:  GEN Biotechnol       Date:  2022-08-18

3.  Towards synthetic PETtrophy: Engineering Pseudomonas putida for concurrent polyethylene terephthalate (PET) monomer metabolism and PET hydrolase expression.

Authors:  Oliver F Brandenberg; Olga T Schubert; Leonid Kruglyak
Journal:  Microb Cell Fact       Date:  2022-06-18       Impact factor: 6.352

4.  Cation-π and hydrophobic interaction controlled PET recognition in double mutated cutinase - identification of a novel binding subsite for better catalytic activity.

Authors:  Anjima James; Susmita De
Journal:  RSC Adv       Date:  2022-07-15       Impact factor: 4.036

5.  Lighting up protein design.

Authors:  Grzegorz Kudla; Marcin Plech
Journal:  Elife       Date:  2022-05-19       Impact factor: 8.713

6.  In Silico Identification of Potential Sites for a Plastic-Degrading Enzyme by a Reverse Screening through the Protein Sequence Space and Molecular Dynamics Simulations.

Authors:  Krit Charupanit; Varomyalin Tipmanee; Thana Sutthibutpong; Praopim Limsakul
Journal:  Molecules       Date:  2022-05-23       Impact factor: 4.927

7.  Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase.

Authors:  Lara Pfaff; Jian Gao; Zhishuai Li; Anna Jäckering; Gert Weber; Jan Mican; Yinping Chen; Weiliang Dong; Xu Han; Christian G Feiler; Yu-Fei Ao; Christoffel P S Badenhorst; David Bednar; Gottfried J Palm; Michael Lammers; Jiri Damborsky; Birgit Strodel; Weidong Liu; Uwe T Bornscheuer; Ren Wei
Journal:  ACS Catal       Date:  2022-07-27       Impact factor: 13.700

Review 8.  Microbial Lipases and Their Potential in the Production of Pharmaceutical Building Blocks.

Authors:  César A Godoy; Juan S Pardo-Tamayo; Oveimar Barbosa
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

9.  Enhanced production of amyrin in Yarrowia lipolytica using a combinatorial protein and metabolic engineering approach.

Authors:  Jing Kong; Lin Miao; Zhihui Lu; Shuhui Wang; Baixiang Zhao; Cuiying Zhang; Dongguang Xiao; Desmond Teo; Susanna Su Jan Leong; Adison Wong; Aiqun Yu
Journal:  Microb Cell Fact       Date:  2022-09-09       Impact factor: 6.352

Review 10.  Fungal Enzymes Involved in Plastics Biodegradation.

Authors:  Marta Elisabetta Eleonora Temporiti; Lidia Nicola; Erik Nielsen; Solveig Tosi
Journal:  Microorganisms       Date:  2022-06-08
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.