Literature DB >> 35474148

Contribution of the histone variant H2A.Z to expression of responsive genes in plants.

Jiaxin Long1, Benjamin Carter2, Emily T Johnson1, Joe Ogas3.   

Abstract

The histone variant H2A.Z plays a critical role in chromatin-based processes such as transcription, replication, and repair in eukaryotes. Although many H2A.Z-associated processes and features are conserved in plants and animals, a distinguishing feature of plant chromatin is the enrichment of H2A.Z in the bodies of genes that exhibit dynamic expression, particularly in response to differentiation and the environment. Recent work sheds new light on the plant machinery that enables dynamic changes in H2A.Z enrichment and identifies additional chromatin-based pathways that contribute to transcriptional properties of H2A.Z-enriched chromatin. In particular, analysis of a variety of responsive loci reveals a repressive role for H2A.Z in expression of responsive genes and identifies roles for SWR1 and INO80 chromatin remodelers in enabling dynamic regulation of H2A.Z levels and transcription. These studies lay the groundwork for understanding how this ancient histone variant is harnessed by plants to enable responsive and dynamic gene expression (Graphical Abstract).
Copyright © 2022 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chromatin; H2A.Z; H3K27me3; INO80 subfamily of remodelers; Stress response; Transcriptional repression

Year:  2022        PMID: 35474148      PMCID: PMC9588091          DOI: 10.1016/j.semcdb.2022.04.006

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.499


  113 in total

1.  The chromatin-remodeling factor AtINO80 plays crucial roles in genome stability maintenance and in plant development.

Authors:  Chi Zhang; Lin Cao; Liang Rong; Zengxuan An; Wangbin Zhou; Jinbiao Ma; Wen-Hui Shen; Yan Zhu; Aiwu Dong
Journal:  Plant J       Date:  2015-05       Impact factor: 6.417

2.  AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.

Authors:  Mingsheng Peng; Yuhai Cui; Yong-Mei Bi; Steven J Rothstein
Journal:  Plant J       Date:  2006-04       Impact factor: 6.417

Review 3.  H2A.Z at the Core of Transcriptional Regulation in Plants.

Authors:  S Vinod Kumar
Journal:  Mol Plant       Date:  2018-07-24       Impact factor: 13.164

4.  Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase.

Authors:  Christopher M Weber; Srinivas Ramachandran; Steven Henikoff
Journal:  Mol Cell       Date:  2014-03-06       Impact factor: 17.970

5.  The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis.

Authors:  Benjamin Carter; Brett Bishop; Kwok Ki Ho; Ru Huang; Wei Jia; Heng Zhang; Pete E Pascuzzi; Roger B Deal; Joe Ogas
Journal:  Plant Cell       Date:  2018-05-25       Impact factor: 11.277

6.  The chromatin remodeling protein INO80 contributes to the removal of H2A.Z at the p53-binding site of the p21 gene in response to doxorubicin.

Authors:  Jian Ding; Chao Yu; Yi Sui; Lingyao Wang; Yang Yang; Fei Wang; Hongjie Yao; Feiyang Xing; Hongshen Liu; Yana Li; Junaid Ali Shah; Yong Cai; Jingji Jin
Journal:  FEBS J       Date:  2018-08-14       Impact factor: 5.542

7.  The histone variant H2A.Z in yeast is almost exclusively incorporated into the +1 nucleosome in the direction of transcription.

Authors:  Dia N Bagchi; Anna M Battenhouse; Daechan Park; Vishwanath R Iyer
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

8.  Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility.

Authors:  Akihisa Osakabe; Zdravko J Lorkovic; Wataru Kobayashi; Hiroaki Tachiwana; Ramesh Yelagandula; Hitoshi Kurumizaka; Frédéric Berger
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

9.  Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes.

Authors:  Sara Zahraeifard; Maryam Foroozani; Aliasghar Sepehri; Dong-Ha Oh; Guannan Wang; Venkata Mangu; Bin Chen; Niranjan Baisakh; Maheshi Dassanayake; Aaron P Smith
Journal:  J Exp Bot       Date:  2018-09-14       Impact factor: 6.992

Review 10.  H2A Variants in Arabidopsis: Versatile Regulators of Genome Activity.

Authors:  Bingkun Lei; Frédéric Berger
Journal:  Plant Commun       Date:  2019-12-14
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