| Literature DB >> 35468838 |
Yanhua Jing1,2, Fengjiao Wang1,2, Ke Zhang1,2, Zhen Chen3.
Abstract
BACKGROUND: The prognosis of pancreatic cancer is poor, with a 5-year survival rate of less than 10%. Studies have shown that chemokines in the tumour microenvironment are often altered, which is associated with immune infiltration and the prognosis and survival of pancreatic cancer patients.Entities:
Keywords: CXC chemokines; CXCL5; Immune infiltration; Pancreatic cancer; Tumour microenvironment
Mesh:
Substances:
Year: 2022 PMID: 35468838 PMCID: PMC9040222 DOI: 10.1186/s12920-022-01246-4
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.622
Fig. 1The mRNA levels of CXC chemokines in PDAC. Panel A shows the numbers of CXC chemokines with statistically significant mRNA upregulation (red) or downregulation (blue). B–Q Are the mRNA levels of CXC chemokines in PDAC tissues and normal tissues. *P < 0.05
The mRNA levels of CXC chemokines in PDAC
| CXC | Type | Fold change | PMID | ||
|---|---|---|---|---|---|
| CXCL1 | NA | NA | NA | NA | NA |
| CXCL2 | Pancreatic ductal adenocarcinoma | 26.364 | 0.001 | 5.416 | 16103885 |
| CXCL3 | Pancreatic carcinom | 5.062 | 3.80E−7 | 5.806 | 19732725 |
| CXCL4 | NA | NA | NA | NA | NA |
| CXCL5 | Pancreatic adenocarcinoma | 5.697 | 6.38E−4 | 4.482 | 12750293 |
| CXCL6 | Pancreatic carcinoma | 2.112 | 0.001 | 3.950 | 15867264 |
| CXCL7 | Pancreatic ductal adenocarcinoma | 3.191 | 7.92E−5 | 4.139 | 16053509 |
| CXCL8 | Pancreatic carcinoma | 4.573 | 1.71E−5 | 5.854 | 15867264 |
| CXCL9 | Pancreatic ductal adenocarcinoma | 2.377 | 6.21E−4 | 4.782 | 16103885 |
| CXCL10 | Pancreatic ductal adenocarcinoma | 3.950 | 1.41E−4 | 4.190 | 19732725 |
| CXCL11/12 | NA | NA | NA | NA | NA |
| CXCL13 | Pancreatic ductal adenocarcinoma | 7.592 | 0.004 | 3.085 | 15548371 |
| CXCL14 | Pancreatic adenocarcinoma | 12.119 | 1.49E−5 | 6.699 | 12651607 |
| CXCL16 | Pancreatic adenocarcinoma | 2.418 | 0.003 | 4.017 | 12651607 |
| CXCL17 | Pancreatic ductal adenocarcinoma | 2.154 | 0.010 | 2.436 | 16053509 |
Fig. 2The mRNA levels of CXC chemokines. The relative levels of CXC chemokines (A), CXCL5 (B) and CXCL16 (D) in multiple cancer types and the relative levels of CXC chemokines in PDAC (C). The mRNA levels of CXC chemokines in different PDAC pathologic stages (F–Q) and T-staging (E)
Fig. 3The disease-free survival (A1–L1) and overall survival (A2–L2) curves of CXC chemokines in PDAC. Estimation of the prognostic value of CXC chemokine genes in PDAC by using the Mantel–Cox test (M1, 2)
Fig. 4Mutations and interactions of differentially expressed CXC chemokines. Mutation of differentially expressed genes from cBioPortal (A). Correlation between each CXC chemokine in PDAC (B). A PPI network from STRING (C). Circular diagram of differentially expressed genes from GeneMANIA (D). The cancer-related pathways (E) and drug sensitivity analysis (F) of CXC chemokines in PDAC
The top 5 significant genes correlated with CXC chemokines in PDAC
| CXC chemokines | Correlated genes |
|---|---|
| CXCL1 | CXCL2, CXCL8, CXCL3, CXCL6, LCN2 |
| CXCL3 | CXCL2, CXCL1, ZC3H12A, CXCL8, CXCL5 |
| CXCL4 | CXCL3, TST, CYP2J2, GPX2, AKR1C3 |
| CXCL5 | BIRC3, CXCL3, CXCL8, BCL2A1, CCL20 |
| CXCL6 | LYPD1, NR1H4, PKHD1, TRPV6, CFTR |
| CXCL8 | CXCL1, ICAM1, SULF1, CXCL2, INHBA |
| CXCL9 | GBP5, CXCL10, GBP4, IDO1, CXCL11 |
| CXCL10 | CXCL11, CXCL9, GBP4, GBP5, GBP1 |
| CXCL13 | MS4A1, CD79B, CD19, CR2, FCRLA |
| CXCL14 | COL8A2, GLI1, MATN3, COL10A1, ISM1 |
| CXCL16 | ZMYND15, MPZL1, MARCKSL1, CCRL2, TTYH3 |
| CXCL17 | VSIG2, MUC1, OLFM4, CAPN8, EPN3 |
Fig. 5Enrichment analysis of CXC chemokines and neighbouring genes in PDAC. Bar plot of GO (A–C, including biological process terms, cellular component terms, and molecular function terms) and KEGG (D) enrichment and the PPI network (E)
Fig. 6Enrichment analysis of CXC chemokines and neighbouring genes in PDAC. Bar graph of the top 20 enriched terms, coloured by P values (A). Network of enriched terms coloured by cluster ID (B). Protein–protein interaction network (C) and MCODE components (D) identified in CXC chemokines and neighbouring genes
Fig. 7Analysis of the correlations between CXC chemokine expression and the immune infiltration levels of B cells, CD4+ T cells, CD8+ T cells, macrophages, neutrophils, and myeloid dendritic cells. And A–L are CXCL1-CXCL17, respectively
Fig. 8The correlations between CXC chemokines and immune score, stromal score, and ESTIMATE score (A–L). Correlation analysis of CXCL5 expression with immune checkpoint genes. M Correlation analysis of CXCL5 expression levels with over 60 common immune checkpoint gene levels in PDAC. N–V CXCL5 expression was positively closely related to PD-1, PD-L1, PD-L2, CTLA4, LGALS9, HAVCR2, CD86, MICB and TNFSF13B in PDAC