Literature DB >> 35467220

Integrated analysis of the miRNA and mRNA expression profiles in Leiocassis longirostris at gonadal maturation.

Han Zhao1, Lu Zhang1, Qiang Li1, Zhongmeng Zhao1, Yuanliang Duan1, Zhipeng Huang1, Hongyu Ke1, Chao Liu1, Huadong Li1, Lu Liu1, Jun Du1, Zhen Wei2, Chengyan Mou1, Jian Zhou3.   

Abstract

Leiocassis longirostris is a commercially important fish species that shows a sexually dimorphic growth pattern. A lack of molecular data from the gonads of this species has hindered research and selective breeding efforts. In this study, we conducted a comprehensive analysis of the expression profile of miRNA and mRNA to explore their regulatory roles in the gonadal maturation stage of L. longirostris. We identified 60 differentially expressed miRNAs and 20,752 differentially expressed genes by sequencing. A total of 90 miRNAs and 21 target genes involved in gonad development and sex determination were identified. Overall, the results of this study enhance our understanding of the molecular mechanisms underlying sex determination and differentiation and provide valuable genomic information for the selective breeding of L. longirostris.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Leiocassis longirostris; Sex determination; mRNA and miRNA sequencing

Mesh:

Substances:

Year:  2022        PMID: 35467220     DOI: 10.1007/s10142-022-00857-5

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.674


  38 in total

Review 1.  FOXL2: at the crossroads of female sex determination and ovarian function.

Authors:  Bérénice A Benayoun; Aurélie Dipietromaria; Claude Bazin; Reiner A Veitia
Journal:  Adv Exp Med Biol       Date:  2009       Impact factor: 2.622

2.  Gene structure, multiple alternative splicing, and expression in gonads of zebrafish Dmrt1.

Authors:  Yiqing Guo; Hanhua Cheng; Xiao Huang; Shang Gao; Hongshi Yu; Rongjia Zhou
Journal:  Biochem Biophys Res Commun       Date:  2005-05-13       Impact factor: 3.575

Review 3.  Involvement of miRNAs in ovarian follicular and luteal development.

Authors:  F X Donadeu; S N Schauer; S D Sontakke
Journal:  J Endocrinol       Date:  2012-10-04       Impact factor: 4.286

4.  Sex-biased miRNA expression in Atlantic halibut (Hippoglossus hippoglossus) brain and gonads.

Authors:  T T Bizuayehu; J Babiak; B Norberg; J M O Fernandes; S D Johansen; I Babiak
Journal:  Sex Dev       Date:  2012-07-26       Impact factor: 1.824

5.  Dimorphic expression of dmrt1 and cyp19a1 (ovarian aromatase) during early gonadal development in pejerrey, Odontesthes bonariensis.

Authors:  J I Fernandino; R S Hattori; T Shinoda; H Kimura; P H Strobl-Mazzulla; C A Strüssmann; G M Somoza
Journal:  Sex Dev       Date:  2009-03-10       Impact factor: 1.824

6.  Analysis of protein expression in zebrafish during gonad differentiation by targeted proteomics.

Authors:  Ksenia J Groh; René Schönenberger; Rik I L Eggen; Helmut Segner; Marc J-F Suter
Journal:  Gen Comp Endocrinol       Date:  2013-08-19       Impact factor: 2.822

7.  The LIM-only coactivator FHL2 modulates WT1 transcriptional activity during gonadal differentiation.

Authors:  Xiaojuan Du; Philip Hublitz; Thomas Günther; Dagmar Wilhelm; Christoph Englert; Roland Schüle
Journal:  Biochim Biophys Acta       Date:  2002-08-19

Review 8.  MicroRNAs: target recognition and regulatory functions.

Authors:  David P Bartel
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

9.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Authors:  Bo Li; Colin N Dewey
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.307

10.  Sex-biased miRNAs in gonad and their potential roles for testis development in yellow catfish.

Authors:  Jing Jing; Junjie Wu; Wei Liu; Shuting Xiong; Wenge Ma; Jin Zhang; Weimin Wang; Jian-Fang Gui; Jie Mei
Journal:  PLoS One       Date:  2014-09-17       Impact factor: 3.240

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