Literature DB >> 35465206

Improvement of millets in the post-genomic era.

T P Ajeesh Krishna1, T Maharajan1, S Antony Ceasar1.   

Abstract

Millets are food and nutrient security crops in the semi-arid tropics of developing countries. Crop improvement using modern tools is one of the priority areas of research in millets. The whole-genome sequence (WGS) of millets provides new insight into understanding and studying the genes, genome organization and genomic-assisted improvement of millets. The WGS of millets helps to carry out genome-wide comparison and co-linearity studies among millets and other cereal crops. This approach might lead to the identification of genes underlying biotic and abiotic stress tolerance in millets. The available genome sequence of millets can be used for SNP identification, allele discovery, association and linkage mapping, identification of valuable candidate genes, and marker-assisted breeding (MAB) programs. Next generation sequencing (NGS) technology provides opportunities for genome-assisted breeding (GAB) through genomic selection (GS) and genome-wide association studies (GAWS) for crop improvement. Clustered, regularly interspaced, short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9) genome editing (GE) system provides new opportunities for millet improvement. In this review, we discuss the details on the WGS available for millets and highlight the importance of utilizing such resources in the post-genomic era for millet improvement. We also draw inroads on the utilization of various approaches such as GS, GWAS, functional genomics, gene validation and GE for millet improvement. This review might be helpful for understanding the developments in the post-genomic era of millet improvement. © Prof. H.S. Srivastava Foundation for Science and Society 2022.

Entities:  

Keywords:  Crop improvement; Food security; Genome-assisted breeding; Genome-editing; Millets; Whole genome sequence

Year:  2022        PMID: 35465206      PMCID: PMC8986959          DOI: 10.1007/s12298-022-01158-8

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  102 in total

1.  Overexpression of the autophagy-related gene SiATG8a from foxtail millet (Setaria italica L.) confers tolerance to both nitrogen starvation and drought stress in Arabidopsis.

Authors:  Wei-wei Li; Ming Chen; Li Zhong; Jia-ming Liu; Zhao-shi Xu; Lian-cheng Li; Yong-Bin Zhou; Chang-Hong Guo; You-Zhi Ma
Journal:  Biochem Biophys Res Commun       Date:  2015-11-11       Impact factor: 3.575

2.  Quantitative trait loci (QTLs) for water use and crop production traits co-locate with major QTL for tolerance to water deficit in a fine-mapping population of pearl millet (Pennisetum glaucum L. R.Br.).

Authors:  Murugesan Tharanya; Jana Kholova; Kaliamoorthy Sivasakthi; Deepmala Seghal; Charles Tom Hash; Basker Raj; Rakesh Kumar Srivastava; Rekha Baddam; Thiyagarajan Thirunalasundari; Rattan Yadav; Vincent Vadez
Journal:  Theor Appl Genet       Date:  2018-04-21       Impact factor: 5.699

Review 3.  Genomic Selection in the Era of Next Generation Sequencing for Complex Traits in Plant Breeding.

Authors:  Javaid A Bhat; Sajad Ali; Romesh K Salgotra; Zahoor A Mir; Sutapa Dutta; Vasudha Jadon; Anshika Tyagi; Muntazir Mushtaq; Neelu Jain; Pradeep K Singh; Gyanendra P Singh; K V Prabhu
Journal:  Front Genet       Date:  2016-12-27       Impact factor: 4.599

4.  Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids.

Authors:  Zhikai Liang; Shashi K Gupta; Cheng-Ting Yeh; Yang Zhang; Daniel W Ngu; Ramesh Kumar; Hemant T Patil; Kanulal D Mungra; Dev Vart Yadav; Abhishek Rathore; Rakesh K Srivastava; Rajeev Gupta; Jinliang Yang; Rajeev K Varshney; Patrick S Schnable; James C Schnable
Journal:  G3 (Bethesda)       Date:  2018-07-02       Impact factor: 3.154

5.  Phenotypic responses of foxtail millet (Setaria italica) genotypes to phosphate supply under greenhouse and natural field conditions.

Authors:  S Antony Ceasar; M Ramakrishnan; K K Vinod; G Victor Roch; Hari D Upadhyaya; Alison Baker; S Ignacimuthu
Journal:  PLoS One       Date:  2020-06-03       Impact factor: 3.240

6.  SiMYB3 in Foxtail Millet (Setaria italica) Confers Tolerance to Low-Nitrogen Stress by Regulating Root Growth in Transgenic Plants.

Authors:  Linhao Ge; Yining Dou; Maomao Li; Pengju Qu; Zhang He; Y Liu; Zhaoshi Xu; Jun Chen; Ming Chen; Youzhi Ma
Journal:  Int J Mol Sci       Date:  2019-11-15       Impact factor: 5.923

7.  Association analysis of SSR markers with phenology, grain, and Stover-yield related traits in pearl millet (Pennisetum glaucum (L.) R. Br.).

Authors:  Baskaran Kannan; Senthilvel Senapathy; Arcot Gajaraj Bhasker Raj; Subhash Chandra; Arunachalam Muthiah; Arun Prabhu Dhanapal; Charles Thomas Hash
Journal:  ScientificWorldJournal       Date:  2014-01-02

8.  Millets for Next Generation Climate-Smart Agriculture.

Authors:  Tirthankar Bandyopadhyay; Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Front Plant Sci       Date:  2017-07-18       Impact factor: 5.753

9.  Precise Editing of the OsPYL9 Gene by RNA-Guided Cas9 Nuclease Confers Enhanced Drought Tolerance and Grain Yield in Rice (Oryza sativa L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins.

Authors:  Babar Usman; Gul Nawaz; Neng Zhao; Shanyue Liao; Yaoguang Liu; Rongbai Li
Journal:  Int J Mol Sci       Date:  2020-10-23       Impact factor: 5.923

10.  A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.

Authors:  Sujan Mamidi; Adam Healey; Pu Huang; Jane Grimwood; Jerry Jenkins; Kerrie Barry; Avinash Sreedasyam; Shengqiang Shu; John T Lovell; Maximilian Feldman; Jinxia Wu; Yunqing Yu; Cindy Chen; Jenifer Johnson; Hitoshi Sakakibara; Takatoshi Kiba; Tetsuya Sakurai; Rachel Tavares; Dmitri A Nusinow; Ivan Baxter; Jeremy Schmutz; Thomas P Brutnell; Elizabeth A Kellogg
Journal:  Nat Biotechnol       Date:  2020-10-05       Impact factor: 54.908

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